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Posthoc contrasts with emmeans, tidybayes, and brms
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library(tidyverse) | |
library(emmeans) | |
library(brms) | |
library(tidybayes) | |
warp.brms <- brm(breaks ~ wool * tension, data = warpbreaks) | |
#get the adjusted means | |
warp_em <- emmeans (warp.brms, ~ tension | wool) | |
warp_em | |
#get all possible contrasts | |
cont <- contrast(warm_em, "tukey") | |
cont | |
#get the posterior draws from the contrasts | |
cont_posterior <- gather_emmeans_draws(cont) | |
#plot | |
ggplot(cont_posterior, | |
aes(y = contrast, x = .value)) + | |
geom_halfeyeh() + | |
facet_wrap(~wool) + | |
geom_vline(xintercept = 0, color = "red", lty = 2) | |
ggplot(cont_posterior, | |
aes(y = contrast, x = .value, fill = wool, group = wool)) + | |
geom_halfeyeh(alpha = 0.5)+ | |
geom_vline(xintercept = 0, color = "red", lty = 2) | |
#need to figure out how to make this look all posterior-y | |
emmip(warp.brms, ~ tension | wool, CIs = TRUE, cov.reduce = range) |
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Hey thank you so much for this code! This definitely helped me to get going myself. I am wondering though is there any reason why you used
contrast(..., "tukey")
instead of pairwise? I am getting the same results for both for my model but I want to be sure that I am not missing anything about using tukey for Bayesian mdoels.