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ramachandran_sse = [
    [2,4,4,4,4,4,4,4,4,4,4,2,2,2,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,2],
    [2,4,4,4,4,4,4,4,4,4,4,4,2,2,2,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,2,2],
    [2,4,4,4,4,4,4,4,4,4,4,4,2,2,2,1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,1,1,2,2,2],
    [2,2,4,4,4,4,4,4,4,4,4,4,4,2,2,2,2,1,1,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,2,2],
    [2,2,4,4,4,4,4,4,4,4,4,4,4,4,2,2,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,2],
    [2,2,4,4,4,4,4,4,4,4,4,4,4,2,2,2,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,2],
    [2,2,2,4,4,4,4,4,4,4,4,4,2,2,2,2,1,1,1,0,0,0,1,1,1,1,1,1,0,0,0,0,0,1,1,2],
    [2,2,2,2,4,4,4,4,4,4,4,2,2,2,2,2,2,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,1,1,2],
    [2,2,2,2,2,4,2,2,4,2,2,2,2,2,2,2,2,1,1,1,1,1,1,1,2,2,1,1,0,0,0,0,0,1,1,2],

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#!/bin/bash

mkdir -p homework/obi/img homework/obi/docs homework/obi/dev homework/obi/pro/ 
mkdir -p homework/obi/pro/blast homework/obi/pro/data/insulin 
ch=$(printf "A\nB\nC\nD\nE\nF")
for i in $ch
do
  touch homework/obi/docs/file-$i.fastq
done
series=$(seq 1234 1255 | tail -n 10)

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/*
 * Calculating Magnitude and Phase from the IJ complex FFT
 * Jean-Christophe Taveau
 * 2022/07/20
 */
 
const imp = IJ.getImage();
IJ.run("FFT Options...", "fft complex");
IJ.run(imp, "FFT", "");
const power = FFT.forward(imp);

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/*
 * Calc Real and Imaginary Parts of a FFT
 * Jean-Christophe Taveau
 * 2022/07/20
 */
 
const imp = IJ.getImage();
const w = imp.getWidth();
const h = imp.getHeight();
// Create Output

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/*
Model Bias by aligning from a reference
Jean-Christophe Taveau
2022/07/19
*/

IJ.log('\\Clear');

// Einstein

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/*
 * Riding the Nashorn: Programming JavaScript on the JVM
 * @author Niko Köbler
 * @link https://www.n-k.de/riding-the-nashorn/
 */
 
var global = this;
var window = this;
var process = {env:{}};

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/**
 * Calc basic statistics (min, max, sum and mean) using Functional Programming in ImageJ
 * Jean-Christophe Taveau
 * 2019-01-30
 */
function basicStats(imp) {
  // Get a two-dimensional array of pixel values
  let arrays= imp.getProcessor().getFloatArray();
  // Flatten 2D -> 1D Array
  let pixels = [].concat.apply([],arrays);

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