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jeetsukumaran/raxml_multi_sge.rst

Created January 21, 2010 06:26
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Phylogenetic Analysis: Multi-Processor RAxML Partitioned Maximum Likelihood Under SGE
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raxml_multi_sge.rst

Phylogenetic Analysis: Multi-Processor RAxML Partitioned Maximum Likelihood Under SGE

Model File (model.txt)

DNA, cr = 1-732
DNA, cytb = 733-1846
DNA, struct = 1847-2716

SGE Job Script

# /bin/sh
#$ -cwd
#$ -V
#$ -q "general.q"
#$ -pe mpi_general 8
#$ -l h_vmem=1G
#$ -l vf=1G
/opt/openmpi/bin/mpirun -np 8  /home/jeet/Environment/local/bin/raxmlHPC-MPI -# 256 -m GTRMIX -q model.txt -n pythonidae-mle -s pythonidae.phylip.dat
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