Install all neuroanatomy toolbox (nat) R packages

readme.md

Install all nat

This gist will let you efficiently install the packages in the nat NeuroAnatomy Toolbox suite. See https://github.com/jefferis/nat for further details.

Start a clean R session and do:

if(!require("devtools")) install.packages("devtools")
devtools::source_gist("39a1182f726989db7e03")

install_all_nat.R

devtools::install_github("jefferis/nat")
# dependencies = TRUE should install the suggested package git2r as well
devtools::install_github("jefferislab/nat.templatebrains", dependencies=TRUE)
devtools::install_github(paste0("jefferislab/", c("nat.nblast", "nat.flybrains")))
# download our standard set of registrations
nat.flybrains::download_jefferislab_registrations()
devtools::install_github("jefferis/flycircuit")
devtools::install_github("jefferis/vfbr")