Install all Jlab

README.md

Install all jlab R packages

This gist will let you efficiently install all the packages main Jefferis Lab R packages.

Start a clean R session and do:

if(!require("devtools")) install.packages("devtools")
devtools::source_gist("52cf9ff123e5107cd96ab2bbbe85a29e")

install_all_jlab.R

# we need devtools for additional installs
if(!require("devtools")) install.packages("devtools")
# this will install all the regular nat packages
devtools::source_gist("39a1182f726989db7e03")

# Old style nat.as
devtools::install_github("jefferis/nat.as")
# fetch AnalysisSuite code bundle from github
nat.as::install_analysis_suite()

# Image processing/registration
devtools::install_github("jefferislab/jimpipeline")

# for EM stuff
devtools::install_github("jefferis/rcatmaid")
devtools::install_github("jefferis/elmr")

# ephys
devtools::install_github("jefferis/gphys")

# imaging
devtools::install_github("jefferis/scanimage")

# behaviour
devtools::install_github("jefferislab/flywatch")
devtools::install_github("jefferis/fmfio")