gistfile1.txt

#!/usr/bin/ruby
require 'fastercsv'
require File.expand_path(File.dirname(__FILE__) + "/../config/environment")

def set_patient_esitmated_age(patient, age, date_of_registration)
  age = age.to_i
  patient_estimated_birthyear = date_of_registration.year - age
  patient_estimated_birthmonth = 7
  patient_estimated_birthday = 1
  patient.birthdate = Date.new(patient_estimated_birthyear, patient_estimated_birthmonth, patient_estimated_birthday)
  patient.birthdate_estimated = true
end

def set_patient_reason_for_starting(patient, date, reason, adult_or_peds)
  encounter = patient.encounters.create(:encounter_datetime => date, :encounter_type => EncounterType.find_by_name("HIV Staging").encounter_type_id)
  yes = Concept.find_by_name("Yes").id
  stage = reason.to_i
  obs = stage < 3 ? Concept.find_by_name("CD4 Count < 250").id : Concept.find_by_name("WHO stage #{stage_number} #{adult_or_peds}").id
  encounter.observations.create(:concept_id => obs, :value_coded => yes, :obs_datetime => date, :patient_id => patient.id)  
end

def create_patient(options)
  p = Patient.create(:gender => options[:gender])
  set_patient_estimated_age(p, options[:age], options[:date_of_registration])
  p.patient_names.create(:given_name => options[:given_name], :family_name => [:family_name])
  # The address is blank do we need a TA/village?
  p.patient_addresses.create
  # Do we need to give a national id?
  # Do we need to worry about preceding/padding 0s ("%04d" % arv_number)?  
  p.patient_identifiers.create(:identifier => "SAL#{options[:arv_number]}", :identifier_type => PatientIdentifierType.find_by_name("Arv national id").id)
  p.patient_identifiers.create(:identifier => options[:occupation], :identifier_type => PatientIdentifierType.find_by_name("Occupation").id)
  p.save!
  p
end

def prescribe_drug(patient, drug, dose, frequency, encounter, date = nil) 
  encounter ||= patient.encounters.create(:encounter_datetime => date, :encounter_type => EncounterType.find_by_name("ART Visit").encounter_type_id)
  encounter.observations.create(:value_drug => drug.drug_id, :value_text => frequency, :value_numeric => dose, :concept_id => Concept.find_by_name("Prescribed Dose").concept_id, :obs_datetime => encounter.encounter_datetime)                                
  encounter
end

def dispense_drugs(patient, date, drugs)
  encounter = patient.encounters.create(:encounter_datetime => date, :encounter_type => EncounterType.find_by_name("Give Drugs").encounter_type_id)
  drugs.each{|hash|
    order = encounter.orders.create(:order_type_id => 1)
    drug_order = order.drug_orders.create(:drug_inventory_id => hash[:drug].drug_id, :quantity => hash[:quantity])
  }  
end

def read(filename)
  starter_drug = Drug.find_by_name("Stavudine 30 Lamivudine 150")
  continuation_drug = Drug.find_by_name("Stavudine 30 Lamivudine 150 Nevirapine 200")
  FasterCSV.foreach(File.dirname(__FILE__) + "/../" + file_name) do |row|
    # Need to tune the dates
    # Need to tune occupation (so it uses the standard set)
    # Need to tune outcome so it uses the concept names
    # Need to add age (even if you force it yourself)
    options = {
      :given_name => row[0],
      :family_name => row[1],
      :gender => row[2],
      :date_of_registration => row[3].to_date,
      :outcome => Concept.find_like_name(row[4]).first,
      :occupation => row[5].capitalize,
      :reason_for_starting => row[6],
      :arv_number => row[7],
      :continuation => row[8] == 'continuation',
      :age => row[9]
    }
    p = create_patient(row)
    if (options[:continuation])
      dispense_drugs(p, options[:date_of_registration], [{:drug => starter_drug, :quantity => 30}, {:drug => continuation_drug, :quantity => 15}]     
    elsif
      dispense_drugs(p, options[:date_of_registration], [{:drug => continuation_drug, :quantity => 60}]     
    end  
    set_patient_reason_for_starting(p, options[:reason_for_starting], options[:date_of_registration], options[:age] <= 14 ? 'peds' : 'adult')

    # Is this the correct outcome date? Death date and transfer date will likely be different. 
    # Will the outcome calculation assume that since they got drugs that they are On ART instead of what we put here?
    # In any event keep it at the end of this function!
    p.set_outcome(options[:outcome], options[:date_of_registration]) 
    p.save!
  end
end

User.current_user = User.find(:first)
Location.current_location = Location.find(:first)
puts "Creating old Patients"
read("b0nds_csv.csv")