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cctbx build issue
Python: 2.6.6 "/usr/bin/python"
Compiler: default
Build mode: release
Warning level: 0
Precompiled Headers: False
Static libraries: False
Static exe: False
Scan Boost headers: False
Write full flex_fwd.h files: False
Build Boost.Python extensions: True
Define BOOST_PYTHON_NO_PY_SIGNATURES: False
Define BOOST_PYTHON_BOOL_INT_STRICT: True
Enable OpenMP if possible: False
Enable CUDA: False
Use opt_resources if available: False
Use environment flags: False
command_version_suffix: None
Relocatable paths anchored at: /website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build
Top-down list of all modules involved:
iotbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/iotbx"
cbflib+adaptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cbflib"
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cbflib_adaptbx"
ccp4io+adaptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/ccp4io"
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/ccp4io_adaptbx"
ucif "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/ucif"
cctbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cctbx"
scitbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/scitbx"
fable "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/fable"
omptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/omptbx"
boost+adaptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/boost"
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx"
tbxx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/tbxx"
chiltbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/chiltbx"
libtbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/libtbx"
Creating files in build directory: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build"
dispatcher_include_template.sh
dispatcher_head.sh
setpaths.sh
setpaths.csh
setpaths_all.sh
setpaths_all.csh
setpaths_debug.sh
unsetpaths.sh
setpaths_debug.csh
unsetpaths.csh
SConstruct
Makefile
run_tests.csh
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/libtbx/command_line"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx/command_line"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/fable/command_line"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/scitbx/command_line"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cctbx/command_line"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cbflib_adaptbx/command_line"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/iotbx/command_line"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx/libtbx_refresh.py"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/scitbx/libtbx_refresh.py"
Generating C++ header files in:
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/include/scitbx/array_family"
Generating C++ files in:
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/include/scitbx/array_family/boost_python"
Using fable to convert scitbx/lbfgs.f
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cctbx/libtbx_refresh.py"
Generating C++ files in:
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/cctbx/eltbx"
Generating C++ files in:
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/include/cctbx/boost_python"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cbflib_adaptbx/libtbx_refresh.py"
Copying to lib: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cbflib/pycbf/pycbf.py"
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/iotbx/libtbx_refresh.py"
Using fable to convert iotbx/pdb/hybrid_36_f.f
Writing: iotbx/pdb/hybrid_36_fem.cpp
Done.
./bin/libtbx.scons -j "`./bin/libtbx.show_number_of_processors`"
scons: Reading SConscript files ...
libtbx.scons: OpenMP is disabled.
AttributeError: environment instance has no attribute 'boost_version':
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/SConstruct", line 8:
SConscript("boost_adaptbx/SConscript")
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/scons/engine/SCons/Script/SConscript.py", line 614:
return method(*args, **kw)
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/scons/engine/SCons/Script/SConscript.py", line 551:
return _SConscript(self.fs, *files, **subst_kw)
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/scons/engine/SCons/Script/SConscript.py", line 260:
exec _file_ in call_stack[-1].globals
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx/SConscript", line 19:
env_etc.boost_version = libtbx.env.boost_version
usr+sys time: 0.17 seconds
wall clock time: 0.23 seconds
make: *** [default] Error 2
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