Created
October 18, 2012 16:26
-
-
Save jeffvanvoorst/3912960 to your computer and use it in GitHub Desktop.
cctbx build issue
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Python: 2.6.6 "/usr/bin/python" | |
Compiler: default | |
Build mode: release | |
Warning level: 0 | |
Precompiled Headers: False | |
Static libraries: False | |
Static exe: False | |
Scan Boost headers: False | |
Write full flex_fwd.h files: False | |
Build Boost.Python extensions: True | |
Define BOOST_PYTHON_NO_PY_SIGNATURES: False | |
Define BOOST_PYTHON_BOOL_INT_STRICT: True | |
Enable OpenMP if possible: False | |
Enable CUDA: False | |
Use opt_resources if available: False | |
Use environment flags: False | |
command_version_suffix: None | |
Relocatable paths anchored at: /website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build | |
Top-down list of all modules involved: | |
iotbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/iotbx" | |
cbflib+adaptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cbflib" | |
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cbflib_adaptbx" | |
ccp4io+adaptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/ccp4io" | |
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/ccp4io_adaptbx" | |
ucif "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/ucif" | |
cctbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cctbx" | |
scitbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/scitbx" | |
fable "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/fable" | |
omptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/omptbx" | |
boost+adaptbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/boost" | |
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx" | |
tbxx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/tbxx" | |
chiltbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/chiltbx" | |
libtbx "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/libtbx" | |
Creating files in build directory: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build" | |
dispatcher_include_template.sh | |
dispatcher_head.sh | |
setpaths.sh | |
setpaths.csh | |
setpaths_all.sh | |
setpaths_all.csh | |
setpaths_debug.sh | |
unsetpaths.sh | |
setpaths_debug.csh | |
unsetpaths.csh | |
SConstruct | |
Makefile | |
run_tests.csh | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/libtbx/command_line" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx/command_line" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/fable/command_line" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/scitbx/command_line" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cctbx/command_line" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cbflib_adaptbx/command_line" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/iotbx/command_line" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx/libtbx_refresh.py" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/scitbx/libtbx_refresh.py" | |
Generating C++ header files in: | |
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/include/scitbx/array_family" | |
Generating C++ files in: | |
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/include/scitbx/array_family/boost_python" | |
Using fable to convert scitbx/lbfgs.f | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cctbx/libtbx_refresh.py" | |
Generating C++ files in: | |
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/cctbx/eltbx" | |
Generating C++ files in: | |
"/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/include/cctbx/boost_python" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/cbflib_adaptbx/libtbx_refresh.py" | |
Copying to lib: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cbflib/pycbf/pycbf.py" | |
Processing: "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/iotbx/libtbx_refresh.py" | |
Using fable to convert iotbx/pdb/hybrid_36_f.f | |
Writing: iotbx/pdb/hybrid_36_fem.cpp | |
Done. |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
./bin/libtbx.scons -j "`./bin/libtbx.show_number_of_processors`" | |
scons: Reading SConscript files ... | |
libtbx.scons: OpenMP is disabled. | |
AttributeError: environment instance has no attribute 'boost_version': | |
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_build/SConstruct", line 8: | |
SConscript("boost_adaptbx/SConscript") | |
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/scons/engine/SCons/Script/SConscript.py", line 614: | |
return method(*args, **kw) | |
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/scons/engine/SCons/Script/SConscript.py", line 551: | |
return _SConscript(self.fs, *files, **subst_kw) | |
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/scons/engine/SCons/Script/SConscript.py", line 260: | |
exec _file_ in call_stack[-1].globals | |
File "/website/drugsite.msi.umn.edu/bluebird_local/src/cctbx_sources/cctbx_project/boost_adaptbx/SConscript", line 19: | |
env_etc.boost_version = libtbx.env.boost_version | |
usr+sys time: 0.17 seconds | |
wall clock time: 0.23 seconds | |
make: *** [default] Error 2 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment