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jennaj/Gemini DM failure Secret

Created November 13, 2018 16:25
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Gemini DM failure
Warning: unable to write GEMINI configuration file to /galaxy/test/deps/gemini/0.18.1/iuc/package_gemini_0_18_1/49de32b47548/gemini-config.yaml
* downloading https://s3.amazonaws.com/gemini-annotations/hg19_fitcons_fc-i6-0_V1-01.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19_fitcons_fc-i6-0_V1-01.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/dbsnp.b141.20140813.hg19.tidy.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/dbsnp.b141.20140813.hg19.tidy.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/clinvar_20150305.tidy.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/clinvar_20150305.tidy.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/29way_pi_lods_elements_12mers.chr_specific.fdr_0.1_with_scores.txt.hg19.merged.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/29way_pi_lods_elements_12mers.chr_specific.fdr_0.1_with_scores.txt.hg19.merged.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.CpG.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.CpG.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.pfam.ucscgenes.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.pfam.ucscgenes.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.gerp.elements.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.gerp.elements.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.cytoband.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.cytoband.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.dgv.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.dgv.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.gwas.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.gwas.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.rmsk.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.rmsk.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.segdup.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.segdup.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/ESP6500SI.all.snps_indels.tidy.v2.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/ESP6500SI.all.snps_indels.tidy.v2.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/ALL.wgs.phase3_shapeit2_mvncall_integrated_v5a.20130502.sites.tidy.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/ALL.wgs.phase3_shapeit2_mvncall_integrated_v5a.20130502.sites.tidy.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/genetic_map_HapMapII_GRCh37.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/genetic_map_HapMapII_GRCh37.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/wgEncodeRegTfbsClusteredV2.cell_count.20130213.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/wgEncodeRegTfbsClusteredV2.cell_count.20130213.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/encode.6celltypes.consensus.bedg.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/encode.6celltypes.consensus.bedg.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/stam.125cells.dnaseI.hg19.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/stam.125cells.dnaseI.hg19.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/GRCh37-gms-mappability.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/GRCh37-gms-mappability.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/GRC_patch_regions.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/GRC_patch_regions.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/kegg_pathways_ensembl66 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/kegg_pathways_ensembl67 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/kegg_pathways_ensembl68 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/kegg_pathways_ensembl69 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/kegg_pathways_ensembl70 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/kegg_pathways_ensembl71 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hprd_interaction_edges.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/cse-hiseq-8_4-2013-02-20.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/cse-hiseq-8_4-2013-02-20.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.vista.enhancers.20131108.bed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.vista.enhancers.20131108.bed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/cosmic-v68-GRCh37.tidy.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/cosmic-v68-GRCh37.tidy.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/detailed_gene_table_v75 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/summary_gene_table_v75 to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/cancer_gene_census.20140120.tsv to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/ExAC.r0.3.sites.vep.tidy.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/ExAC.r0.3.sites.vep.tidy.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/geno2mp.variants.tidy.vcf.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/geno2mp.variants.tidy.vcf.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/hg19.gerp.bw to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/whole_genome_SNVs.tsv.compressed.gz to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
* downloading https://s3.amazonaws.com/gemini-annotations/whole_genome_SNVs.tsv.compressed.gz.tbi to /galaxy-repl/test/jobdir/000/938/938514/dataset_1208358_files/gemini/data
Warning: unable to write GEMINI configuration file to /galaxy/test/deps/gemini/0.18.1/iuc/package_gemini_0_18_1/49de32b47548/gemini-config.yaml
Gemini data files updated
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