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Created November 25, 2014 10:22
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2014-11-25 09:53:06.138+0000 INFO [org.neo4j]: No locking implementation specified, defaulting to 'community'
2014-11-25 09:53:06.265+0000 INFO [org.neo4j]: --- INITIALIZED diagnostics START ---
2014-11-25 09:53:06.268+0000 INFO [org.neo4j]: Neo4j Kernel properties:
neostore.propertystore.db.mapped_memory=331M
array_block_size=3000
neostore.nodestore.db.mapped_memory=100M
neostore.relationshipstore.db.mapped_memory=406M
neostore.propertystore.db.strings.mapped_memory=282M
store_dir=target/graph
neostore.propertystore.db.arrays.mapped_memory=319M
string_block_size=600
ephemeral=false
2014-11-25 09:53:06.271+0000 INFO [org.neo4j]: Diagnostics providers:
org.neo4j.kernel.configuration.Config
org.neo4j.kernel.info.DiagnosticsManager
SYSTEM_MEMORY
JAVA_MEMORY
OPERATING_SYSTEM
JAVA_VIRTUAL_MACHINE
CLASSPATH
LIBRARY_PATH
SYSTEM_PROPERTIES
NETWORK
2014-11-25 09:53:06.272+0000 INFO [org.neo4j]: System memory information:
Total Physical memory: 4.00 GB
Free Physical memory: 71.10 MB
Committed virtual memory: 3.58 GB
Total swap space: 7.00 GB
Free swap space: 938.00 MB
2014-11-25 09:53:06.276+0000 INFO [org.neo4j]: JVM memory information:
Free memory: 52.26 MB
Total memory: 61.50 MB
Max memory: 910.50 MB
Garbage Collector: PS Scavenge: [PS Eden Space, PS Survivor Space]
Garbage Collector: PS MarkSweep: [PS Eden Space, PS Survivor Space, PS Old Gen, PS Perm Gen]
Memory Pool: Code Cache (Non-heap memory): committed=2.44 MB, used=624.50 kB, max=48.00 MB, threshold=0.00 B
Memory Pool: PS Eden Space (Heap memory): committed=16.50 MB, used=6.86 MB, max=336.50 MB, threshold=?
Memory Pool: PS Survivor Space (Heap memory): committed=2.50 MB, used=2.36 MB, max=2.50 MB, threshold=?
Memory Pool: PS Old Gen (Heap memory): committed=42.50 MB, used=16.00 kB, max=682.50 MB, threshold=0.00 B
Memory Pool: PS Perm Gen (Non-heap memory): committed=21.00 MB, used=8.22 MB, max=82.00 MB, threshold=0.00 B
2014-11-25 09:53:06.282+0000 INFO [org.neo4j]: Operating system information:
Operating System: Mac OS X; version: 10.9.5; arch: x86_64; cpus: 4
Max number of file descriptors: 10240
Number of open file descriptors: 158
Process id: 44687@green-tea.local
Byte order: LITTLE_ENDIAN
Local timezone: Europe/Berlin
2014-11-25 09:53:06.286+0000 INFO [org.neo4j]: JVM information:
VM Name: Java HotSpot(TM) 64-Bit Server VM
VM Vendor: Oracle Corporation
VM Version: 24.51-b03
JIT compiler: HotSpot 64-Bit Tiered Compilers
VM Arguments: [-Dfile.encoding=UTF-8]
2014-11-25 09:53:06.287+0000 INFO [org.neo4j]: Java classpath:
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/mapdb/mapdb/1.0.6/mapdb-1.0.6.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/spark-project/akka/akka-remote_2.10/2.2.3-shaded-protobuf/akka-remote_2.10-2.2.3-shaded-protobuf.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/spark/spark-core_2.10/1.1.0/spark-core_2.10-1.1.0.jar
[classpath + loader.0] file:/Users/jeremy/Documents/Workspaces/eis/diachron/Luzzu/luzzu-semantics/target/classes/
[classpath + loader.0] file:/Users/jeremy/Documents/Workspaces/eis/diachron/target/classes/
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/xerial/snappy/snappy-java/1.0.5.3/snappy-java-1.0.5.3.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.0.1/jackson-core-asl-1.0.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-cypher-compiler-1.9/2.0.3/neo4j-cypher-compiler-1.9-2.0.3.jar
[loader.1] file:/System/Library/Java/Extensions/vecmath.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/codahale/metrics/metrics-graphite/3.0.0/metrics-graphite-3.0.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/slf4j/jul-to-slf4j/1.7.5/jul-to-slf4j-1.7.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/orbit/javax.activation/1.1.0.v201105071233/javax.activation-1.1.0.v201105071233.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/codehaus/jackson/jackson-mapper-asl/1.0.1/jackson-mapper-asl-1.0.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/objenesis/objenesis/1.0/objenesis-1.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/codahale/metrics/metrics-jvm/3.0.0/metrics-jvm-3.0.0.jar
[loader.1] file:/Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/ext/sunec.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/ning/compress-lzf/1.0.0/compress-lzf-1.0.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/concurrent/concurrent/1.3.4/concurrent-1.3.4.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar
[loader.1] file:/System/Library/Java/Extensions/libJ3D.jnilib
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-server/8.1.14.v20131031/jetty-server-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-jndi/8.1.14.v20131031/jetty-jndi-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/twitter/chill-java/0.3.6/chill-java-0.3.6.jar
[classpath + loader.0] file:/Applications/Eclipse/configuration/org.eclipse.osgi/bundles/165/1/.cp/
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-cypher-compiler-2.0/2.0.3/neo4j-cypher-compiler-2.0-2.0.3.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-cypher-commons/2.1.5/neo4j-cypher-commons-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/Documents/Workspaces/eis/diachron/Luzzu/luzzu-operations/target/classes/
[loader.1] file:/System/Library/Java/Extensions/QTJava.zip
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/slf4j/slf4j-jdk14/1.7.5/slf4j-jdk14-1.7.5.jar
[loader.1] file:/Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/ext/localedata.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/charsets.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/googlecode/concurrentlinkedhashmap/concurrentlinkedhashmap-lru/1.3.1/concurrentlinkedhashmap-lru-1.3.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/zookeeper/zookeeper/3.4.5/zookeeper-3.4.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/curator/curator-recipes/2.4.0/curator-recipes-2.4.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/spark-project/akka/akka-actor_2.10/2.2.3-shaded-protobuf/akka-actor_2.10-2.2.3-shaded-protobuf.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/jena/jena-arq/2.11.0/jena-arq-2.11.0.jar
[loader.1] file:/System/Library/Java/Extensions/j3daudio.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/hsqldb/hsqldb/1.8.0.10/hsqldb-1.8.0.10.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/sf/jung/jung-api/2.0.1/jung-api-2.0.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-plus/8.1.14.v20131031/jetty-plus-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/jena/jena-iri/1.0.0/jena-iri-1.0.0.jar
[loader.1] file:/System/Library/Java/Extensions/libQTJNative.jnilib
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/geronimo/specs/geronimo-jta_1.1_spec/1.1.1/geronimo-jta_1.1_spec-1.1.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/orbit/javax.mail.glassfish/1.4.1.v201005082020/javax.mail.glassfish-1.4.1.v201005082020.jar
[loader.1] file:/System/Library/Java/Extensions/j3dcore.jar
[loader.1] file:/usr/lib/java/libjdns_sd.jnilib
[loader.1] file:/Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/ext/sunpkcs11.jar
[classpath + loader.0] file:/Applications/Eclipse/configuration/org.eclipse.osgi/bundles/166/1/.cp/
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-beanutils/commons-beanutils/1.7.0/commons-beanutils-1.7.0.jar
[loader.1] file:/Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/ext/zipfs.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.3.1/jackson-core-2.3.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/orbit/javax.transaction/1.1.1.v201105210645/javax.transaction-1.1.1.v201105210645.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/classes
[loader.1] file:/System/Library/Java/Extensions/jai_core.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/colt/colt/1.2.0/colt-1.2.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-configuration/commons-configuration/1.6/commons-configuration-1.6.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-udc/2.1.5/neo4j-udc-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/curator/curator-client/2.4.0/curator-client-2.4.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/esotericsoftware/kryo/kryo/2.21/kryo-2.21.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/httpcomponents/httpclient-cache/4.3.5/httpclient-cache-4.3.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-graph-algo/2.1.5/neo4j-graph-algo-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/clearspring/analytics/stream/2.7.0/stream-2.7.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/twitter/chill_2.10/0.3.6/chill_2.10-0.3.6.jar
[loader.1] file:/Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/ext/dnsns.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-primitive-collections/2.1.5/neo4j-primitive-collections-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/spark-project/protobuf/protobuf-java/2.4.1-shaded/protobuf-java-2.4.1-shaded.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/typesafe/config/1.0.2/config-1.0.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-cypher-compiler-2.1/2.1.5/neo4j-cypher-compiler-2.1-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-digester/commons-digester/1.8/commons-digester-1.8.jar
[loader.1] file:/System/Library/Java/Extensions/AppleScriptEngine.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-lucene-index/2.1.5/neo4j-lucene-index-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/jena/jena-core/2.11.0/jena-core-2.11.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/httpcomponents/httpasyncclient-cache/4.0.2/httpasyncclient-cache-4.0.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/hamcrest/hamcrest-all/1.3/hamcrest-all-1.3.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/orbit/javax.servlet/3.0.0.v201112011016/javax.servlet-3.0.0.v201112011016.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/stax/stax-api/1.0.1/stax-api-1.0.1.jar
[classpath + loader.0] file:/Users/jeremy/Documents/Workspaces/eis/diachron/Luzzu/luzzu-assessment/target/classes/
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-lang/commons-lang/2.4/commons-lang-2.4.jar
[loader.1] file:/System/Library/Java/Extensions/dns_sd.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/codahale/metrics/metrics-core/3.0.0/metrics-core-3.0.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/java/dev/jets3t/jets3t/0.7.1/jets3t-0.7.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/codehaus/woodstox/wstx-asl/3.2.6/wstx-asl-3.2.6.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/jce.jar
[loader.1] file:/System/Library/Java/Extensions/MRJToolkit.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/parboiled/parboiled-scala_2.10/1.1.6/parboiled-scala_2.10-1.1.6.jar
[classpath + loader.0] file:/Users/jeremy/Documents/Workspaces/eis/diachron/target/test-classes/
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/mesos/mesos/0.18.1/mesos-0.18.1-shaded-protobuf.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/sunrsasign.jar
[loader.1] file:/System/Library/Java/Extensions/libmlib_jai.jnilib
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/sourceforge/collections/collections-generic/4.01/collections-generic-4.01.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/slf4j/jcl-over-slf4j/1.7.5/jcl-over-slf4j-1.7.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-io/8.1.14.v20131031/jetty-io-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/jena/jena-tdb/1.0.0/jena-tdb-1.0.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/parboiled/parboiled-core/1.1.6/parboiled-core-1.1.6.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/sf/opencsv/opencsv/2.0/opencsv-2.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/jpountz/lz4/lz4/1.2.0/lz4-1.2.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-kernel/2.1.5/neo4j-kernel-2.1.5.jar
[loader.1] file:/System/Library/Java/Extensions/mlibwrapper_jai.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/httpcomponents/httpasyncclient/4.0.2/httpasyncclient-4.0.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/jline/jline/0.9.94/jline-0.9.94.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-el/commons-el/1.0/commons-el-1.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-http/8.1.14.v20131031/jetty-http-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/sf/py4j/py4j/0.8.2.1/py4j-0.8.2.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-servlet/8.1.14.v20131031/jetty-servlet-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-jmx/2.1.5/neo4j-jmx-2.1.5.jar
[loader.1] file:/System/Library/Java/Extensions/libJ3DAudio.jnilib
[loader.1] file:/System/Library/Java/Extensions/libAppleScriptEngine.jnilib
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/tachyonproject/tachyon/0.5.0/tachyon-0.5.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/esotericsoftware/minlog/minlog/1.2/minlog-1.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-util/8.1.14.v20131031/jetty-util-8.1.14.v20131031.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/jfr.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-codec/commons-codec/1.6/commons-codec-1.6.jar
[loader.1] file:/System/Library/Java/Extensions/libJ3DUtils.jnilib
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/hadoop/hadoop-client/1.0.4/hadoop-client-1.0.4.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/curator/curator-framework/2.4.0/curator-framework-2.4.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-beanutils/commons-beanutils-core/1.8.0/commons-beanutils-core-1.8.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/hadoop/hadoop-core/1.0.4/hadoop-core-1.0.4.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/jsse.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/io/netty/netty-all/4.0.23.Final/netty-all-4.0.23.Final.jar
[loader.1] file:/System/Library/Java/Extensions/j3dutils.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/spark-project/akka/akka-slf4j_2.10/2.2.3-shaded-protobuf/akka-slf4j_2.10-2.2.3-shaded-protobuf.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/tachyonproject/tachyon-client/0.5.0/tachyon-client-0.5.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-net/commons-net/2.2/commons-net-2.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-cypher/2.1.5/neo4j-cypher-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/slf4j/slf4j-log4j12/1.7.5/slf4j-log4j12-1.7.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/xmlenc/xmlenc/0.52/xmlenc-0.52.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/slf4j/slf4j-api/1.7.5/slf4j-api-1.7.5.jar
[loader.1] file:/System/Library/Java/Extensions/jai_codec.jar
[loader.1] file:/Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/ext/sunjce_provider.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/oro/oro/2.0.8/oro-2.0.8.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/thoughtworks/paranamer/paranamer/2.6/paranamer-2.6.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/json4s/json4s-jackson_2.10/3.2.10/json4s-jackson_2.10-3.2.10.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-continuation/8.1.14.v20131031/jetty-continuation-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/lucene/lucene-core/3.6.2/lucene-core-3.6.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/scala-lang/scalap/2.10.0/scalap-2.10.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/commons/commons-collections4/4.0/commons-collections4-4.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/io/netty/netty/3.6.6.Final/netty-3.6.6.Final.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/resources.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/scala-lang/scala-reflect/2.10.0/scala-reflect-2.10.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-xml/8.1.14.v20131031/jetty-xml-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-webapp/8.1.14.v20131031/jetty-webapp-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/esotericsoftware/reflectasm/reflectasm/1.07/reflectasm-1.07-shaded.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/json4s/json4s-ast_2.10/3.2.10/json4s-ast_2.10-3.2.10.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/uncommons/maths/uncommons-maths/1.2.2a/uncommons-maths-1.2.2a.jar
[bootstrap] /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib/rt.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/scala-lang/scala-library/2.10.4/scala-library-2.10.4.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.3.0/jackson-annotations-2.3.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/commons-httpclient/commons-httpclient/3.1/commons-httpclient-3.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/eclipse/jetty/jetty-security/8.1.14.v20131031/jetty-security-8.1.14.v20131031.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/mockito/mockito-core/1.9.5/mockito-core-1.9.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/sf/jung/jung-graph-impl/2.0.1/jung-graph-impl-2.0.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/scala-lang/scala-compiler/2.10.0/scala-compiler-2.10.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/json4s/json4s-core_2.10/3.2.10/json4s-core_2.10-3.2.10.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/spark-project/pyrolite/2.0.1/pyrolite-2.0.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/junit/junit/4.11/junit-4.11.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j-graph-matching/2.1.5/neo4j-graph-matching-2.1.5.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/com/codahale/metrics/metrics-json/3.0.0/metrics-json-3.0.0.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/sf/jung/jung-io/2.0.1/jung-io-2.0.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/net/sf/jung/jung-algorithms/2.0.1/jung-algorithms-2.0.1.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/apache/httpcomponents/httpcore-nio/4.3.2/httpcore-nio-4.3.2.jar
[classpath + loader.0] file:/Users/jeremy/.m2/repository/org/neo4j/neo4j/2.1.5/neo4j-2.1.5.jar
2014-11-25 09:53:06.295+0000 INFO [org.neo4j]: Library path:
/Users/jeremy/Library/Java/Extensions
/Library/Java/Extensions
/Network/Library/Java/Extensions
/System/Library/Java/Extensions
/usr/lib/java
/Users/jeremy/Documents/Workspaces/eis/diachron
2014-11-25 09:53:06.296+0000 INFO [org.neo4j]: System.properties:
sun.boot.library.path = /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home/jre/lib
user.country.format = DE
gopherProxySet = false
path.separator = :
file.encoding.pkg = sun.io
user.country = US
sun.java.launcher = SUN_STANDARD
sun.os.patch.level = unknown
user.dir = /Users/jeremy/Documents/Workspaces/eis/diachron
sun.jnu.encoding = UTF-8
sun.management.compiler = HotSpot 64-Bit Tiered Compilers
user.home = /Users/jeremy
user.timezone = Europe/Berlin
file.encoding = UTF-8
user.name = jeremy
sun.java.command = org.eclipse.jdt.internal.junit.runner.RemoteTestRunner -version 3 -port 56606 -testLoaderClass org.eclipse.jdt.internal.junit4.runner.JUnit4TestLoader -loaderpluginname org.eclipse.jdt.junit4.runtime -classNames eu.diachron.qualitymetrics.accessibility.interlinking.InterlinkDetectionMetricTest
sun.arch.data.model = 64
user.language = en
awt.toolkit = sun.lwawt.macosx.LWCToolkit
file.separator = /
sun.io.unicode.encoding = UnicodeBig
sun.cpu.endian = little
sun.cpu.isalist =
2014-11-25 09:53:06.297+0000 INFO [org.neo4j]: Network information:
Interface en0:
address: fe80:0:0:0:7a31:c1ff:feca:d812%4
address: 10.144.103.10
Interface lo0:
address: fe80:0:0:0:0:0:0:1%1
address: 0:0:0:0:0:0:0:1
address: 127.0.0.1
2014-11-25 09:53:06.299+0000 INFO [org.neo4j]: --- INITIALIZED diagnostics END ---
2014-11-25 09:53:06.454+0000 INFO [org.neo4j]: Creating new db @ target/graph/neostore
2014-11-25 09:53:06.491+0000 INFO [org.neo4j]: [target/graph/neostore.relationshiptypestore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.492+0000 INFO [org.neo4j]: [target/graph/neostore.relationshiptypestore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.492+0000 INFO [org.neo4j]: target/graph/neostore.relationshiptypestore.db.names hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.494+0000 INFO [org.neo4j]: target/graph/neostore.relationshiptypestore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.497+0000 INFO [org.neo4j]: [target/graph/neostore.labeltokenstore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.498+0000 INFO [org.neo4j]: [target/graph/neostore.labeltokenstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.498+0000 INFO [org.neo4j]: target/graph/neostore.labeltokenstore.db.names hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.499+0000 INFO [org.neo4j]: target/graph/neostore.labeltokenstore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.503+0000 INFO [org.neo4j]: [target/graph/neostore.relationshiptypestore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.503+0000 INFO [org.neo4j]: [target/graph/neostore.relationshiptypestore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.504+0000 INFO [org.neo4j]: [target/graph/neostore.labeltokenstore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.504+0000 INFO [org.neo4j]: [target/graph/neostore.labeltokenstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.505+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.strings] brickCount=0 brickSize=295488b mappedMem=295698432b (storeSize=608b)
2014-11-25 09:53:06.505+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.index.keys] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.506+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.index] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.506+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.arrays] brickCount=0 brickSize=333888b mappedMem=334495744b (storeSize=3008b)
2014-11-25 09:53:06.509+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db] brickCount=0 brickSize=3470773b mappedMem=347078656b (storeSize=0b)
2014-11-25 09:53:06.513+0000 INFO [org.neo4j]: [target/graph/neostore.relationshipstore.db] brickCount=0 brickSize=4257208b mappedMem=425721856b (storeSize=0b)
2014-11-25 09:53:06.514+0000 INFO [org.neo4j]: [target/graph/neostore.nodestore.db.labels] brickCount=0 brickSize=0b mappedMem=0b (storeSize=68b)
2014-11-25 09:53:06.516+0000 INFO [org.neo4j]: [target/graph/neostore.nodestore.db] brickCount=0 brickSize=1048575b mappedMem=104857600b (storeSize=0b)
2014-11-25 09:53:06.516+0000 INFO [org.neo4j]: [target/graph/neostore.schemastore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=64b)
2014-11-25 09:53:06.518+0000 INFO [org.neo4j]: [target/graph/neostore.relationshipgroupstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=25b)
2014-11-25 09:53:06.519+0000 INFO [org.neo4j]: [target/graph/neostore] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.524+0000 INFO [org.neo4j]: target/graph/neostore.relationshiptypestore.db.names hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.525+0000 INFO [org.neo4j]: target/graph/neostore.relationshiptypestore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.526+0000 INFO [org.neo4j]: target/graph/neostore.labeltokenstore.db.names hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.526+0000 INFO [org.neo4j]: target/graph/neostore.labeltokenstore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.527+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.strings hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.528+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.index.keys hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.529+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.index hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.530+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.arrays hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.530+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.531+0000 INFO [org.neo4j]: target/graph/neostore.relationshipstore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.532+0000 INFO [org.neo4j]: target/graph/neostore.nodestore.db.labels hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.533+0000 INFO [org.neo4j]: target/graph/neostore.nodestore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.534+0000 INFO [org.neo4j]: target/graph/neostore.schemastore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.534+0000 INFO [org.neo4j]: target/graph/neostore.relationshipgroupstore.db hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:53:06.535+0000 INFO [org.neo4j]: target/graph/neostore hit=0 miss=10 switches=0 ooe=0
2014-11-25 09:53:06.544+0000 INFO [org.neo4j]: [target/graph/neostore.relationshiptypestore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.544+0000 INFO [org.neo4j]: [target/graph/neostore.relationshiptypestore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.544+0000 INFO [org.neo4j]: [target/graph/neostore.labeltokenstore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.545+0000 INFO [org.neo4j]: [target/graph/neostore.labeltokenstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.545+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.strings] brickCount=0 brickSize=295488b mappedMem=295698432b (storeSize=608b)
2014-11-25 09:53:06.545+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.index.keys] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-11-25 09:53:06.546+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.index] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-11-25 09:53:06.546+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db.arrays] brickCount=0 brickSize=333888b mappedMem=334495744b (storeSize=3008b)
2014-11-25 09:53:06.546+0000 INFO [org.neo4j]: [target/graph/neostore.propertystore.db] brickCount=0 brickSize=3470773b mappedMem=347078656b (storeSize=0b)
2014-11-25 09:53:06.547+0000 INFO [org.neo4j]: [target/graph/neostore.relationshipstore.db] brickCount=0 brickSize=4257208b mappedMem=425721856b (storeSize=0b)
2014-11-25 09:53:06.547+0000 INFO [org.neo4j]: [target/graph/neostore.nodestore.db.labels] brickCount=0 brickSize=0b mappedMem=0b (storeSize=68b)
2014-11-25 09:53:06.547+0000 INFO [org.neo4j]: [target/graph/neostore.nodestore.db] brickCount=0 brickSize=1048575b mappedMem=104857600b (storeSize=0b)
2014-11-25 09:53:06.548+0000 INFO [org.neo4j]: [target/graph/neostore.schemastore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=64b)
2014-11-25 09:53:06.548+0000 INFO [org.neo4j]: [target/graph/neostore.relationshipgroupstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=25b)
2014-11-25 09:53:06.548+0000 INFO [org.neo4j]: [target/graph/neostore] brickCount=0 brickSize=0b mappedMem=0b (storeSize=81b)
2014-11-25 09:53:06.672+0000 INFO [org.neo4j]: No lucene scan store index found, this might just be first use. Preparing to rebuild.
2014-11-25 09:53:06.725+0000 INFO [org.neo4j]: No lucene scan store index found, this might just be first use. Preparing to rebuild.
2014-11-25 09:53:06.836+0000 INFO [org.neo4j]: Opened logical log [target/graph/nioneo_logical.log.1] version=0, lastTxId=1 (clean)
2014-11-25 09:53:06.838+0000 INFO [org.neo4j]: Rebuilding lucene scan store, this may take a while
2014-11-25 09:53:06.841+0000 INFO [org.neo4j]: Lucene scan store rebuilt (roughly -1 nodes)
2014-11-25 09:53:06.845+0000 INFO [org.neo4j]: TM new log: tm_tx_log.1
2014-11-25 09:53:06.852+0000 INFO [org.neo4j]: Kernel health set to OK
2014-11-25 09:53:06.881+0000 INFO [org.neo4j]: Opened logical log [target/graph/index/lucene.log.1] version=0, lastTxId=1 (clean)
2014-11-25 09:53:06.889+0000 INFO [org.neo4j]: --- STARTED diagnostics for KernelDiagnostics:Versions START ---
2014-11-25 09:53:06.889+0000 INFO [org.neo4j]: Graph Database: org.neo4j.kernel.EmbeddedGraphDatabase StoreId{creationTime=1416909186460, randomId=8099093751214720866, storeVersion=14406081294923270, upgradeTime=1416909186460, upgradeId=8099093751214720866}
2014-11-25 09:53:06.889+0000 INFO [org.neo4j]: Kernel version: Neo4j - Graph Database Kernel (neo4j-kernel), version: 2.1.5
2014-11-25 09:53:06.889+0000 INFO [org.neo4j]: Neo4j component versions:
2014-11-25 09:53:06.897+0000 INFO [org.neo4j]: Neo4j - JMX support (neo4j-jmx), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Lucene Index (neo4j-lucene-index), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Graph Matching (neo4j-graph-matching), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Cypher (neo4j-cypher), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Graph Database Kernel (neo4j-kernel), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Cypher Compiler 2.0 (neo4j-cypher-compiler-2.0), version: 2.0.3; revision: 2.0.3:2.0-maint:72/307c563c11b75fdc71cfa6df05daf9b08d6c37dc
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Graph Algorithms (neo4j-graph-algo), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j Community (neo4j), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Cypher Compiler 1.9 (neo4j-cypher-compiler-1.9), version: 2.0.3; revision: 2.0.3:2.0-maint:72/307c563c11b75fdc71cfa6df05daf9b08d6c37dc
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: neo4j-udc, version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: Neo4j - Cypher Commons (neo4j-cypher-commons), version: 2.1.5; revision: 2.1.5:2.1-maint:529/45c3cc04946c2b0e243e48c8252e40cb85931744
2014-11-25 09:53:06.898+0000 INFO [org.neo4j]: --- STARTED diagnostics for KernelDiagnostics:Versions END ---
2014-11-25 09:53:06.901+0000 INFO [org.neo4j]: --- STARTED diagnostics for NEO_STORE_VERSIONS START ---
2014-11-25 09:53:06.902+0000 INFO [org.neo4j]: Store versions:
Store versions:
NeoStore v0.A.3
SchemaStore v0.A.3
NodeStore v0.A.3
RelationshipStore v0.A.3
RelationshipTypeStore v0.A.3
LabelTokenStore v0.A.3
PropertyStore v0.A.3
PropertyIndexStore v0.A.3
StringPropertyStore v0.A.3
ArrayPropertyStore v0.A.3
RelationshipGroupStore v0.A.3
2014-11-25 09:53:06.902+0000 INFO [org.neo4j]: --- STARTED diagnostics for NEO_STORE_VERSIONS END ---
2014-11-25 09:53:06.902+0000 INFO [org.neo4j]: --- STARTED diagnostics for NEO_STORE_ID_USAGE START ---
2014-11-25 09:53:06.902+0000 INFO [org.neo4j]: Id usage:
Id usage:
SchemaStore: used=1 high=0
NodeStore: used=0 high=-1
RelationshipStore: used=0 high=-1
RelationshipTypeStore: used=0 high=-1
LabelTokenStore: used=0 high=-1
PropertyStore: used=0 high=-1
PropertyIndexStore: used=0 high=-1
StringPropertyStore: used=1 high=0
ArrayPropertyStore: used=1 high=0
RelationshipGroupStore: used=1 high=0
2014-11-25 09:53:06.904+0000 INFO [org.neo4j]: --- STARTED diagnostics for NEO_STORE_ID_USAGE END ---
2014-11-25 09:53:06.904+0000 INFO [org.neo4j]: --- STARTED diagnostics for PERSISTENCE_WINDOW_POOL_STATS START ---
2014-11-25 09:53:06.904+0000 INFO [org.neo4j]: --- STARTED diagnostics for PERSISTENCE_WINDOW_POOL_STATS END ---
2014-11-25 09:53:06.904+0000 INFO [org.neo4j]: --- STARTED diagnostics for KernelDiagnostics:StoreFiles START ---
2014-11-25 09:53:06.905+0000 INFO [org.neo4j]: Disk space on partition (Total / Free / Free %): 120473067520 / 27193020416 / 22
Storage files: (filename : modification date - size)
active_tx_log: 2014-11-25T10:53:06+0100 - 11.00 B
index:
lucene-store.db: 2014-11-25T10:53:06+0100 - 40.00 B
lucene.log.1: 2014-11-25T10:53:06+0100 - 16.00 B
lucene.log.active: 2014-11-25T10:53:06+0100 - 4.00 B
- Total: 2014-11-25T10:53:06+0100 - 60.00 B
lock: 2014-11-25T10:53:06+0100 - 0.00 B
messages.log: 2014-11-25T10:53:06+0100 - 36.19 kB
neostore: 2014-11-25T10:53:06+0100 - 81.00 B
neostore.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.labeltokenstore.db: 2014-11-25T10:53:06+0100 - 0.00 B
neostore.labeltokenstore.db.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.labeltokenstore.db.names: 2014-11-25T10:53:06+0100 - 38.00 B
neostore.labeltokenstore.db.names.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.nodestore.db: 2014-11-25T10:53:06+0100 - 0.00 B
neostore.nodestore.db.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.nodestore.db.labels: 2014-11-25T10:53:06+0100 - 68.00 B
neostore.nodestore.db.labels.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.propertystore.db: 2014-11-25T10:53:06+0100 - 0.00 B
neostore.propertystore.db.arrays: 2014-11-25T10:53:06+0100 - 2.94 kB
neostore.propertystore.db.arrays.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.propertystore.db.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.propertystore.db.index: 2014-11-25T10:53:06+0100 - 0.00 B
neostore.propertystore.db.index.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.propertystore.db.index.keys: 2014-11-25T10:53:06+0100 - 38.00 B
neostore.propertystore.db.index.keys.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.propertystore.db.strings: 2014-11-25T10:53:06+0100 - 608.00 B
neostore.propertystore.db.strings.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.relationshipgroupstore.db: 2014-11-25T10:53:06+0100 - 25.00 B
neostore.relationshipgroupstore.db.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.relationshipstore.db: 2014-11-25T10:53:06+0100 - 0.00 B
neostore.relationshipstore.db.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.relationshiptypestore.db: 2014-11-25T10:53:06+0100 - 0.00 B
neostore.relationshiptypestore.db.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.relationshiptypestore.db.names: 2014-11-25T10:53:06+0100 - 38.00 B
neostore.relationshiptypestore.db.names.id: 2014-11-25T10:53:06+0100 - 9.00 B
neostore.schemastore.db: 2014-11-25T10:53:06+0100 - 64.00 B
neostore.schemastore.db.id: 2014-11-25T10:53:06+0100 - 9.00 B
nioneo_logical.log.1: 2014-11-25T10:53:06+0100 - 16.00 B
nioneo_logical.log.active: 2014-11-25T10:53:06+0100 - 4.00 B
schema:
label:
lucene:
write.lock: 2014-11-25T10:53:06+0100 - 0.00 B
- Total: 2014-11-25T10:53:06+0100 - 0.00 B
- Total: 2014-11-25T10:53:06+0100 - 0.00 B
- Total: 2014-11-25T10:53:06+0100 - 0.00 B
store_lock: 2014-11-25T10:53:06+0100 - 0.00 B
tm_tx_log.1: 2014-11-25T10:53:06+0100 - 0.00 B
2014-11-25 09:53:06.919+0000 INFO [org.neo4j]: --- STARTED diagnostics for KernelDiagnostics:StoreFiles END ---
2014-11-25 09:53:06.985+0000 INFO [org.neo4j]: Database is now ready
2014-11-25 09:53:07.031+0000 INFO [org.neo4j]: Index population started: [:Value(value) [provider: {key=lucene, version=1.0}]]
2014-11-25 09:53:07.059+0000 INFO [org.neo4j]: Index population completed. Index is now online: [:Value(value) [provider: {key=lucene, version=1.0}]]
2014-11-25 09:53:11.919+0000 INFO [org.neo4j]: GC Monitor: Application threads blocked for 532ms.
2014-11-25 09:53:13.203+0000 INFO [org.neo4j]: GC Monitor: Application threads blocked for 474ms.
2014-11-25 09:54:13.917+0000 ERROR [org.neo4j]: setting TM not OK. Kernel has encountered some problem, please perform neccesary action (tx recovery/restart) null
javax.transaction.xa.XAException
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:560)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:448)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:385)
at org.neo4j.kernel.impl.transaction.TransactionImpl.commit(TransactionImpl.java:123)
at org.neo4j.kernel.TopLevelTransaction.close(TopLevelTransaction.java:124)
at eu.diachron.qualitymetrics.accessibility.interlinking.InterlinkDetectionMetricNeo4J.compute(InterlinkDetectionMetricNeo4J.java:103)
at eu.diachron.qualitymetrics.accessibility.interlinking.InterlinkDetectionMetricTest.testInterlinkDetectionMetric(InterlinkDetectionMetricTest.java:43)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50)
at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197)
Caused by: org.neo4j.kernel.impl.nioneo.store.MultipleUnderlyingStorageExceptions: Errors when closing (flushing) index updaters: (:label[0](property[0])) java.io.FileNotFoundException: /Users/jeremy/Documents/Workspaces/eis/diachron/target/graph/schema/index/lucene/1/_4ml.frq (Too many open files in system)
at org.neo4j.kernel.impl.api.index.IndexUpdaterMap.close(IndexUpdaterMap.java:100)
at org.neo4j.kernel.impl.api.index.IndexingService.updateIndexes(IndexingService.java:338)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.applyCommit(NeoStoreTransaction.java:705)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.doCommit(NeoStoreTransaction.java:631)
at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:327)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commitWriteTx(XaResourceManager.java:632)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commit(XaResourceManager.java:533)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceHelpImpl.commit(XaResourceHelpImpl.java:64)
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:548)
... 31 more
Suppressed: org.neo4j.kernel.impl.nioneo.store.UnderlyingStorageException: java.io.FileNotFoundException: /Users/jeremy/Documents/Workspaces/eis/diachron/target/graph/schema/index/lucene/1/_4ml.frq (Too many open files in system)
at org.neo4j.kernel.impl.api.index.IndexUpdaterMap.close(IndexUpdaterMap.java:92)
... 39 more
Caused by: java.io.FileNotFoundException: /Users/jeremy/Documents/Workspaces/eis/diachron/target/graph/schema/index/lucene/1/_4ml.frq (Too many open files in system)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(RandomAccessFile.java:241)
at org.apache.lucene.store.FSDirectory$FSIndexOutput.<init>(FSDirectory.java:441)
at org.apache.lucene.store.FSDirectory.createOutput(FSDirectory.java:306)
at org.apache.lucene.index.FormatPostingsDocsWriter.<init>(FormatPostingsDocsWriter.java:47)
at org.apache.lucene.index.FormatPostingsTermsWriter.<init>(FormatPostingsTermsWriter.java:33)
at org.apache.lucene.index.FormatPostingsFieldsWriter.<init>(FormatPostingsFieldsWriter.java:51)
at org.apache.lucene.index.FreqProxTermsWriter.flush(FreqProxTermsWriter.java:85)
at org.apache.lucene.index.TermsHash.flush(TermsHash.java:113)
at org.apache.lucene.index.DocInverter.flush(DocInverter.java:70)
at org.apache.lucene.index.DocFieldProcessor.flush(DocFieldProcessor.java:60)
at org.apache.lucene.index.DocumentsWriter.flush(DocumentsWriter.java:581)
at org.apache.lucene.index.IndexWriter.doFlush(IndexWriter.java:3587)
at org.apache.lucene.index.IndexWriter.flush(IndexWriter.java:3552)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:450)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:399)
at org.apache.lucene.index.DirectoryReader.doOpenFromWriter(DirectoryReader.java:413)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:432)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:375)
at org.apache.lucene.index.IndexReader.openIfChanged(IndexReader.java:508)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:109)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:57)
at org.apache.lucene.search.ReferenceManager.maybeRefresh(ReferenceManager.java:137)
at org.neo4j.kernel.api.impl.index.LuceneIndexAccessor$LuceneIndexUpdater.close(LuceneIndexAccessor.java:203)
at org.neo4j.kernel.impl.api.index.FlippableIndexProxy$LockingIndexUpdater.close(FlippableIndexProxy.java:345)
at org.neo4j.kernel.impl.api.index.ContractCheckingIndexProxy$1.close(ContractCheckingIndexProxy.java:110)
at org.neo4j.kernel.impl.api.index.IndexUpdaterMap.close(IndexUpdaterMap.java:84)
... 39 more
2014-11-25 09:54:13.922+0000 ERROR [org.neo4j]: TM error tx commit commit threw exception
org.neo4j.graphdb.TransactionFailureException: commit threw exception
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:500)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:385)
at org.neo4j.kernel.impl.transaction.TransactionImpl.commit(TransactionImpl.java:123)
at org.neo4j.kernel.TopLevelTransaction.close(TopLevelTransaction.java:124)
at eu.diachron.qualitymetrics.accessibility.interlinking.InterlinkDetectionMetricNeo4J.compute(InterlinkDetectionMetricNeo4J.java:103)
at eu.diachron.qualitymetrics.accessibility.interlinking.InterlinkDetectionMetricTest.testInterlinkDetectionMetric(InterlinkDetectionMetricTest.java:43)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50)
at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390)
at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197)
Caused by: javax.transaction.xa.XAException
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:560)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:448)
... 30 more
Caused by: org.neo4j.kernel.impl.nioneo.store.MultipleUnderlyingStorageExceptions: Errors when closing (flushing) index updaters: (:label[0](property[0])) java.io.FileNotFoundException: /Users/jeremy/Documents/Workspaces/eis/diachron/target/graph/schema/index/lucene/1/_4ml.frq (Too many open files in system)
at org.neo4j.kernel.impl.api.index.IndexUpdaterMap.close(IndexUpdaterMap.java:100)
at org.neo4j.kernel.impl.api.index.IndexingService.updateIndexes(IndexingService.java:338)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.applyCommit(NeoStoreTransaction.java:705)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.doCommit(NeoStoreTransaction.java:631)
at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:327)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commitWriteTx(XaResourceManager.java:632)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commit(XaResourceManager.java:533)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceHelpImpl.commit(XaResourceHelpImpl.java:64)
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:548)
... 31 more
Suppressed: org.neo4j.kernel.impl.nioneo.store.UnderlyingStorageException: java.io.FileNotFoundException: /Users/jeremy/Documents/Workspaces/eis/diachron/target/graph/schema/index/lucene/1/_4ml.frq (Too many open files in system)
at org.neo4j.kernel.impl.api.index.IndexUpdaterMap.close(IndexUpdaterMap.java:92)
... 39 more
Caused by: java.io.FileNotFoundException: /Users/jeremy/Documents/Workspaces/eis/diachron/target/graph/schema/index/lucene/1/_4ml.frq (Too many open files in system)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(RandomAccessFile.java:241)
at org.apache.lucene.store.FSDirectory$FSIndexOutput.<init>(FSDirectory.java:441)
at org.apache.lucene.store.FSDirectory.createOutput(FSDirectory.java:306)
at org.apache.lucene.index.FormatPostingsDocsWriter.<init>(FormatPostingsDocsWriter.java:47)
at org.apache.lucene.index.FormatPostingsTermsWriter.<init>(FormatPostingsTermsWriter.java:33)
at org.apache.lucene.index.FormatPostingsFieldsWriter.<init>(FormatPostingsFieldsWriter.java:51)
at org.apache.lucene.index.FreqProxTermsWriter.flush(FreqProxTermsWriter.java:85)
at org.apache.lucene.index.TermsHash.flush(TermsHash.java:113)
at org.apache.lucene.index.DocInverter.flush(DocInverter.java:70)
at org.apache.lucene.index.DocFieldProcessor.flush(DocFieldProcessor.java:60)
at org.apache.lucene.index.DocumentsWriter.flush(DocumentsWriter.java:581)
at org.apache.lucene.index.IndexWriter.doFlush(IndexWriter.java:3587)
at org.apache.lucene.index.IndexWriter.flush(IndexWriter.java:3552)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:450)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:399)
at org.apache.lucene.index.DirectoryReader.doOpenFromWriter(DirectoryReader.java:413)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:432)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:375)
at org.apache.lucene.index.IndexReader.openIfChanged(IndexReader.java:508)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:109)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:57)
at org.apache.lucene.search.ReferenceManager.maybeRefresh(ReferenceManager.java:137)
at org.neo4j.kernel.api.impl.index.LuceneIndexAccessor$LuceneIndexUpdater.close(LuceneIndexAccessor.java:203)
at org.neo4j.kernel.impl.api.index.FlippableIndexProxy$LockingIndexUpdater.close(FlippableIndexProxy.java:345)
at org.neo4j.kernel.impl.api.index.ContractCheckingIndexProxy$1.close(ContractCheckingIndexProxy.java:110)
at org.neo4j.kernel.impl.api.index.IndexUpdaterMap.close(IndexUpdaterMap.java:84)
... 39 more
2014-11-25 09:54:13.937+0000 INFO [org.neo4j]: Shutdown started
2014-11-25 09:54:13.938+0000 INFO [org.neo4j]: Database is now unavailable
2014-11-25 09:54:13.945+0000 INFO [org.neo4j]: Closed log target/graph/index/lucene.log
2014-11-25 09:54:13.946+0000 INFO [org.neo4j]: TM shutting down
2014-11-25 09:54:13.946+0000 INFO [org.neo4j]: Close invoked with 1 running transaction(s).
2014-11-25 09:54:13.946+0000 INFO [org.neo4j]: Dirty log: target/graph/nioneo_logical.log.1 now closed. Recovery will be started automatically next time it is opened.
2014-11-25 09:54:13.993+0000 INFO [org.neo4j]: target/graph/neostore.relationshiptypestore.db.names hit=0 miss=1 switches=0 ooe=0
2014-11-25 09:54:13.994+0000 INFO [org.neo4j]: target/graph/neostore.relationshiptypestore.db hit=0 miss=1 switches=0 ooe=0
2014-11-25 09:54:13.996+0000 INFO [org.neo4j]: target/graph/neostore.labeltokenstore.db.names hit=0 miss=3 switches=0 ooe=0
2014-11-25 09:54:13.997+0000 INFO [org.neo4j]: target/graph/neostore.labeltokenstore.db hit=0 miss=3 switches=0 ooe=0
2014-11-25 09:54:14.003+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.strings hit=17070 miss=0 switches=0 ooe=0
2014-11-25 09:54:14.004+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.index.keys hit=0 miss=1 switches=0 ooe=0
2014-11-25 09:54:14.004+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.index hit=0 miss=1 switches=0 ooe=0
2014-11-25 09:54:14.005+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db.arrays hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:54:14.006+0000 INFO [org.neo4j]: target/graph/neostore.propertystore.db hit=36061 miss=0 switches=0 ooe=0
2014-11-25 09:54:14.008+0000 INFO [org.neo4j]: target/graph/neostore.relationshipstore.db hit=66019 miss=0 switches=0 ooe=0
2014-11-25 09:54:14.009+0000 INFO [org.neo4j]: target/graph/neostore.nodestore.db.labels hit=0 miss=0 switches=0 ooe=0
2014-11-25 09:54:14.009+0000 INFO [org.neo4j]: target/graph/neostore.nodestore.db hit=42361 miss=0 switches=0 ooe=0
2014-11-25 09:54:14.010+0000 INFO [org.neo4j]: target/graph/neostore.schemastore.db hit=0 miss=2 switches=0 ooe=0
2014-11-25 09:54:14.011+0000 INFO [org.neo4j]: target/graph/neostore.relationshipgroupstore.db hit=0 miss=6517 switches=0 ooe=0
2014-11-25 09:54:14.012+0000 INFO [org.neo4j]: target/graph/neostore hit=0 miss=12045 switches=0 ooe=0
2014-11-25 09:54:14.013+0000 INFO [org.neo4j]: NeoStore closed
2014-11-25 09:54:14.013+0000 INFO [org.neo4j]: --- STOPPING diagnostics START ---
2014-11-25 09:54:14.013+0000 INFO [org.neo4j]: --- STOPPING diagnostics END ---
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