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README.md

Motion Chart of 10 species Protected Vs Unprotected

Raw
index.html
<!DOCTYPE html>
<html class="ocks-org do-not-copy">
<meta charset="utf-8">
<title>RVC Top 75 Species </title>
<style>
@import url(../style.css?aea6f0a);
body {
background-color: white;
}
#chart {
margin-left: -40px;
height: 506px;
}
text {
font: 10px sans-serif;
}
.dot {
stroke: #000;
}
.axis path, .axis line {
fill: none;
stroke: #000;
shape-rendering: crispEdges;
}
.label {
fill: #777;
}
.year.label {
font: 500 196px "Helvetica Neue";
fill: #ddd;
}
.year.label.active {
fill: #aaa;
}
.overlay {
fill: none;
pointer-events: all;
cursor: ew-resize;
}
</style>
<header>
</header>
<h1>RVC Top 75 Species</h1>
<p id="chart"></p>
<aside>Mouseover the year to move forward and backwards through time.</aside>
<script src="//d3js.org/d3.v3.min.js" charset="utf-8"></script></script>
<script>
// Various accessors that specify the four dimensions of data to visualize.
function x(d) { return d.occurrence; }
function y(d) { return d.lbar; }
function radius(d) { return d.density; }
function color(d) { return d.family; }
function key(d) { return d.species; }
// Chart dimensions.
var margin = {top: 19.5, right: 19.5, bottom: 19.5, left: 39.5},
width = 960 - margin.right,
height = 500 - margin.top - margin.bottom;
// Various scales. These domains make assumptions of data, naturally.
var xScale = d3.scale.linear().domain([0, 1]).range([0, width]),
yScale = d3.scale.linear().domain([1, 65]).range([height, 0]),
radiusScale = d3.scale.linear().domain([0, 20]).range([5, 50]),
colorScale = d3.scale.category20();
// The x & y axes.
var xAxis = d3.svg.axis().orient("bottom").scale(xScale).ticks(12, d3.format(",d")),
yAxis = d3.svg.axis().scale(yScale).orient("right");
// Create the SVG container and set the origin.
var svg = d3.select("#chart").append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
// Add the x-axis.
svg.append("g")
.attr("class", "x axis")
.attr("transform", "translate(0," + height + ")")
.call(xAxis);
// Add the y-axis.
svg.append("g")
.attr("class", "y axis")
.call(yAxis);
// Add an x-axis label.
svg.append("text")
.attr("class", "x label")
.attr("text-anchor", "end")
.attr("x", width)
.attr("y", height - 6)
.text("Occurrence");
// Add a y-axis label.
svg.append("text")
.attr("class", "y label")
.attr("text-anchor", "end")
.attr("y", 6)
.attr("dy", ".75em")
.attr("transform", "rotate(-90)")
.text("lbar");
// Add the year label; the value is set on transition.
var label = svg.append("text")
.attr("class", "year label")
.attr("text-anchor", "end")
.attr("y", height - (.65*height))
.attr("x", width)
.text(2000);
// Load the data.
d3.json("RVCData.json", function(nations) {
// A bisector since many nation's data is sparsely-defined.
var bisect = d3.bisector(function(d) { return d[0]; });
// Add a dot per nation. Initialize the data at 1800, and set the colors.
var dot = svg.append("g")
.attr("class", "dots")
.selectAll(".dot")
.data(interpolateData(2000))
.enter().append("circle")
.attr("class", function(d) { return "dot" + " " + d.species.substring(0,3) })
.style("fill", function(d) { return colorScale(color(d)); })
.call(position)
.sort(order)
.on("click", function(d) {
var fam = d.species.substring(0,3);
d3.selectAll(".dot").style("opacity", 1);
d3.selectAll(".dot").filter("*:not(." + fam + ")").style("opacity", .05);
});
// Add a title.
dot.append("title")
.text(function(d) { return d.species; });
// Add an overlay for the year label.
var box = label.node().getBBox();
var overlay = svg.append("rect")
.attr("class", "overlay")
.attr("x", box.x)
.attr("y", box.y)
.attr("width", box.width)
.attr("height", box.height)
.on("mouseover", enableInteraction);
// Start a transition that interpolates the data based on year.
svg.transition()
.duration(30000)
.ease("linear")
.tween("year", tweenYear)
.each("end", enableInteraction);
// Positions the dots based on data.
function position(dot) {
dot .attr("cx", function(d) { return xScale(x(d)); })
.attr("cy", function(d) { return yScale(y(d)); })
.attr("r", function(d) { return radiusScale(radius(d)); });
}
// Defines a sort order so that the smallest dots are drawn on top.
function order(a, b) {
return radius(b) - radius(a);
}
// After the transition finishes, you can mouseover to change the year.
function enableInteraction() {
var yearScale = d3.scale.linear()
.domain([2000, 2014])
.range([box.x + 10, box.x + box.width - 10])
.clamp(true);
// Cancel the current transition, if any.
svg.transition().duration(0);
overlay
.on("mouseover", mouseover)
.on("mouseout", mouseout)
.on("mousemove", mousemove)
.on("touchmove", mousemove);
function mouseover() {
label.classed("active", true);
}
function mouseout() {
label.classed("active", false);
}
function mousemove() {
displayYear(yearScale.invert(d3.mouse(this)[0]));
}
}
// Tweens the entire chart by first tweening the year, and then the data.
// For the interpolated data, the dots and label are redrawn.
function tweenYear() {
var year = d3.interpolateNumber(2000, 2014);
return function(t) { displayYear(year(t)); };
}
// Updates the display to show the specified year.
function displayYear(year) {
dot.data(interpolateData(year), key).call(position).sort(order);
label.text(Math.round(year));
}
// Interpolates the dataset for the given (fractional) year.
function interpolateData(year) {
return nations.map(function(d) {
return {
species: d.species,
family: d.family,
lbar: interpolateValues(d.lbar, year),
density: interpolateValues(d.density, year),
occurrence: interpolateValues(d.occurrence, year)
};
});
}
// Finds (and possibly interpolates) the value for the specified year.
function interpolateValues(values, year) {
var i = bisect.left(values, year, 0, values.length - 1),
a = values[i];
if (i > 0) {
var b = values[i - 1],
t = (year - a[0]) / (b[0] - a[0]);
return a[1] * (1 - t) + b[1] * t;
}
return a[1];
}
});
</script>
<script>
GoogleAnalyticsObject = "ga", ga = function() { ga.q.push(arguments); }, ga.q = [], ga.l = +new Date;
ga("create", "UA-48272912-3", "ocks.org");
ga("send", "pageview");
</script>
<script async src="//www.google-analytics.com/analytics.js"></script>
Raw
RVCData.json
[
{
"family": "unprotected",
"species": "ocy chry _U",
"occurrence": [
[
2000,
0.61091
],
[
2001,
0.52899
],
[
2002,
0.50964
],
[
2003,
0.50884
],
[
2004,
0.50087
],
[
2005,
0.63854
],
[
2006,
0.56455
],
[
2007,
0.61298
],
[
2008,
0.70919
],
[
2009,
0.66708
],
[
2010,
0.56066
],
[
2011,
0.63803
],
[
2012,
0.68985
],
[
2014,
0.60707
]
],
"density": [
[
2000,
3.102
],
[
2001,
3.0479
],
[
2002,
4.6553
],
[
2003,
2.4848
],
[
2004,
2.3593
],
[
2005,
4.6542
],
[
2006,
4.1986
],
[
2007,
3.6671
],
[
2008,
5.2064
],
[
2009,
4.4291
],
[
2010,
3.5216
],
[
2011,
3.9036
],
[
2012,
4.5604
],
[
2014,
4.7965
]
],
"abundance": [
[
2000,
1.1336e+07
],
[
2001,
1.1139e+07
],
[
2002,
1.7013e+07
],
[
2003,
9.0806e+06
],
[
2004,
8.6222e+06
],
[
2005,
1.7009e+07
],
[
2006,
1.5344e+07
],
[
2007,
1.3401e+07
],
[
2008,
1.9027e+07
],
[
2009,
1.6186e+07
],
[
2010,
1.2869e+07
],
[
2011,
1.4266e+07
],
[
2012,
1.6666e+07
],
[
2014,
1.7527e+07
]
],
"biomass": [
[
2000,
1.2596e+06
],
[
2001,
1.7312e+06
],
[
2002,
1.8877e+06
],
[
2003,
9.5045e+05
],
[
2004,
1.8952e+06
],
[
2005,
1.4732e+06
],
[
2006,
1.7384e+06
],
[
2007,
2.0633e+06
],
[
2008,
2.6779e+06
],
[
2009,
1.6628e+06
],
[
2010,
1.5743e+06
],
[
2011,
1.9602e+06
],
[
2012,
2.0326e+06
],
[
2014,
2.7975e+06
]
],
"lbar": [
[
2000,
16.57
],
[
2001,
16.84
],
[
2002,
17.456
],
[
2003,
16.389
],
[
2004,
20.403
],
[
2005,
15.256
],
[
2006,
16.61
],
[
2007,
18.7
],
[
2008,
18.001
],
[
2009,
16.383
],
[
2010,
17.639
],
[
2011,
18.169
],
[
2012,
17.056
],
[
2014,
18.742
]
]
},
{
"family": "unprotected",
"species": "epi mori _U",
"occurrence": [
[
2000,
0.25333
],
[
2001,
0.27999
],
[
2002,
0.21163
],
[
2003,
0.2416
],
[
2004,
0.20012
],
[
2005,
0.19143
],
[
2006,
0.093417
],
[
2007,
0.097479
],
[
2008,
0.16956
],
[
2009,
0.18561
],
[
2010,
0.16141
],
[
2011,
0.1114
],
[
2012,
0.17359
],
[
2014,
0.090835
]
],
"density": [
[
2000,
0.20567
],
[
2001,
0.22558
],
[
2002,
0.17628
],
[
2003,
0.19287
],
[
2004,
0.12956
],
[
2005,
0.16521
],
[
2006,
0.070876
],
[
2007,
0.066064
],
[
2008,
0.12748
],
[
2009,
0.12118
],
[
2010,
0.10465
],
[
2011,
0.082249
],
[
2012,
0.12706
],
[
2014,
0.071247
]
],
"abundance": [
[
2000,
7.5162e+05
],
[
2001,
8.2439e+05
],
[
2002,
6.442e+05
],
[
2003,
7.0483e+05
],
[
2004,
4.7347e+05
],
[
2005,
6.0377e+05
],
[
2006,
2.5902e+05
],
[
2007,
2.4143e+05
],
[
2008,
4.6587e+05
],
[
2009,
4.4285e+05
],
[
2010,
3.8246e+05
],
[
2011,
3.0058e+05
],
[
2012,
4.6435e+05
],
[
2014,
2.6035e+05
]
],
"biomass": [
[
2000,
3.858e+05
],
[
2001,
8.3611e+05
],
[
2002,
9.607e+05
],
[
2003,
1.376e+06
],
[
2004,
7.6942e+05
],
[
2005,
6.6033e+05
],
[
2006,
2.9214e+05
],
[
2007,
3.7757e+05
],
[
2008,
4.8023e+05
],
[
2009,
3.1145e+05
],
[
2010,
4.2498e+05
],
[
2011,
3.1775e+05
],
[
2012,
5.1155e+05
],
[
2014,
3.6618e+05
]
],
"lbar": [
[
2000,
30.365
],
[
2001,
33.747
],
[
2002,
40.037
],
[
2003,
47.199
],
[
2004,
42.315
],
[
2005,
39.537
],
[
2006,
40.151
],
[
2007,
44.357
],
[
2008,
37.206
],
[
2009,
34.599
],
[
2010,
40.689
],
[
2011,
37.131
],
[
2012,
37.068
],
[
2014,
45.67
]
]
},
{
"family": "unprotected",
"species": "lac maxi _U",
"occurrence": [
[
2000,
0.56153
],
[
2001,
0.67708
],
[
2002,
0.68455
],
[
2003,
0.67677
],
[
2004,
0.66782
],
[
2005,
0.61227
],
[
2006,
0.57108
],
[
2007,
0.62647
],
[
2008,
0.73927
],
[
2009,
0.68772
],
[
2010,
0.65403
],
[
2011,
0.69334
],
[
2012,
0.71861
],
[
2014,
0.64505
]
],
"density": [
[
2000,
0.97373
],
[
2001,
1.4718
],
[
2002,
1.2453
],
[
2003,
1.2004
],
[
2004,
1.2562
],
[
2005,
1.266
],
[
2006,
1.0405
],
[
2007,
1.1162
],
[
2008,
1.663
],
[
2009,
1.2735
],
[
2010,
1.1603
],
[
2011,
1.1354
],
[
2012,
1.3858
],
[
2014,
1.6185
]
],
"abundance": [
[
2000,
3.5585e+06
],
[
2001,
5.3786e+06
],
[
2002,
4.551e+06
],
[
2003,
4.3869e+06
],
[
2004,
4.5909e+06
],
[
2005,
4.6266e+06
],
[
2006,
3.8025e+06
],
[
2007,
4.079e+06
],
[
2008,
6.0774e+06
],
[
2009,
4.6541e+06
],
[
2010,
4.2402e+06
],
[
2011,
4.1492e+06
],
[
2012,
5.0644e+06
],
[
2014,
5.9143e+06
]
],
"biomass": [
[
2000,
8.1421e+05
],
[
2001,
2.0283e+06
],
[
2002,
2.1517e+06
],
[
2003,
1.5841e+06
],
[
2004,
2.3366e+06
],
[
2005,
1.52e+06
],
[
2006,
1.4333e+06
],
[
2007,
1.7262e+06
],
[
2008,
2.3588e+06
],
[
2009,
1.4617e+06
],
[
2010,
1.0995e+06
],
[
2011,
1.4061e+06
],
[
2012,
1.6702e+06
],
[
2014,
2.0451e+06
]
],
"lbar": [
[
2000,
18.99
],
[
2001,
23.35
],
[
2002,
24.98
],
[
2003,
23.718
],
[
2004,
26.867
],
[
2005,
22.605
],
[
2006,
23.52
],
[
2007,
24.634
],
[
2008,
24.304
],
[
2009,
22.946
],
[
2010,
21.951
],
[
2011,
23.871
],
[
2012,
23.974
],
[
2014,
24.588
]
]
},
{
"family": "unprotected",
"species": "myc bona _U",
"occurrence": [
[
2000,
0.15625
],
[
2001,
0.23233
],
[
2002,
0.20174
],
[
2003,
0.11036
],
[
2004,
0.13762
],
[
2005,
0.19432
],
[
2006,
0.11237
],
[
2007,
0.16385
],
[
2008,
0.17624
],
[
2009,
0.13822
],
[
2010,
0.17731
],
[
2011,
0.2582
],
[
2012,
0.17851
],
[
2014,
0.085103
]
],
"density": [
[
2000,
0.12927
],
[
2001,
0.22745
],
[
2002,
0.18273
],
[
2003,
0.083529
],
[
2004,
0.12107
],
[
2005,
0.20986
],
[
2006,
0.094083
],
[
2007,
0.14167
],
[
2008,
0.12155
],
[
2009,
0.10257
],
[
2010,
0.13672
],
[
2011,
0.24318
],
[
2012,
0.13804
],
[
2014,
0.049514
]
],
"abundance": [
[
2000,
4.7242e+05
],
[
2001,
8.3119e+05
],
[
2002,
6.6777e+05
],
[
2003,
3.0525e+05
],
[
2004,
4.4246e+05
],
[
2005,
7.6692e+05
],
[
2006,
3.4382e+05
],
[
2007,
5.1775e+05
],
[
2008,
4.4419e+05
],
[
2009,
3.7482e+05
],
[
2010,
4.9965e+05
],
[
2011,
8.8871e+05
],
[
2012,
5.0448e+05
],
[
2014,
1.8093e+05
]
],
"biomass": [
[
2000,
2.4126e+05
],
[
2001,
1.0409e+06
],
[
2002,
2.0577e+06
],
[
2003,
5.9784e+05
],
[
2004,
2.971e+06
],
[
2005,
1.899e+06
],
[
2006,
1.0193e+06
],
[
2007,
1.9495e+06
],
[
2008,
5.5888e+05
],
[
2009,
5.5717e+05
],
[
2010,
7.1262e+05
],
[
2011,
1.5208e+06
],
[
2012,
7.6428e+05
],
[
2014,
5.589e+05
]
],
"lbar": [
[
2000,
21.18
],
[
2001,
31.277
],
[
2002,
44.847
],
[
2003,
41.513
],
[
2004,
57.608
],
[
2005,
45.558
],
[
2006,
39.902
],
[
2007,
47.874
],
[
2008,
36.897
],
[
2009,
38.796
],
[
2010,
37.01
],
[
2011,
39.567
],
[
2012,
40.098
],
[
2014,
51.525
]
]
},
{
"family": "unprotected",
"species": "lut gris _U",
"occurrence": [
[
2000,
0.31988
],
[
2001,
0.29941
],
[
2002,
0.26257
],
[
2003,
0.19036
],
[
2004,
0.22838
],
[
2005,
0.26553
],
[
2006,
0.23733
],
[
2007,
0.23446
],
[
2008,
0.26936
],
[
2009,
0.26449
],
[
2010,
0.32189
],
[
2011,
0.26518
],
[
2012,
0.24612
],
[
2014,
0.21584
]
],
"density": [
[
2000,
2.0327
],
[
2001,
3.0303
],
[
2002,
2.2271
],
[
2003,
1.5622
],
[
2004,
1.4641
],
[
2005,
2.5146
],
[
2006,
1.9145
],
[
2007,
1.5617
],
[
2008,
2.0949
],
[
2009,
3.0486
],
[
2010,
2.9363
],
[
2011,
2.5191
],
[
2012,
1.7017
],
[
2014,
1.6674
]
],
"abundance": [
[
2000,
7.4283e+06
],
[
2001,
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[
2005,
36.611
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[
2006,
37.17
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[
2007,
46.313
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[
2008,
38.608
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[
2009,
43.572
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[
2010,
38.864
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[
2011,
41.511
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[
2012,
37.991
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[
2014,
55.567
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2000,
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2001,
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2002,
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2003,
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2004,
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2005,
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2006,
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2007,
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2008,
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2009,
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2010,
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2011,
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2012,
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2000,
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2001,
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2002,
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2003,
10.018
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2004,
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2005,
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2006,
7.6063
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2007,
6.9991
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2008,
8.6718
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2009,
7.0654
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2010,
7.0205
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2011,
12.178
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2012,
7.0439
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2014,
9.4914
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2000,
1.0752e+06
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2001,
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2002,
8.8523e+05
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2003,
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2004,
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2005,
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2006,
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[
2007,
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[
2008,
1.4682e+06
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[
2009,
1.1963e+06
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[
2010,
1.1887e+06
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[
2011,
2.0619e+06
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[
2012,
1.1926e+06
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[
2014,
1.6049e+06
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],
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2000,
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2001,
2.5196e+05
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2002,
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2003,
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2004,
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2005,
1.0704e+05
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[
2006,
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[
2007,
2.3722e+05
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2008,
1.5497e+05
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[
2009,
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[
2010,
1.058e+05
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[
2011,
2.2219e+05
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[
2012,
1.2043e+05
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[
2014,
2.4445e+05
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2000,
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2001,
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2002,
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2003,
18.345
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2004,
19.213
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2005,
16.188
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[
2006,
16.92
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[
2007,
18.731
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[
2008,
16.266
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[
2009,
16.371
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[
2010,
15.58
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[
2011,
16.44
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[
2012,
16.907
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[
2014,
18.606
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2000,
0.46473
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2001,
0.4249
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2002,
0.38805
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2003,
0.44637
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2004,
0.49963
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2005,
0.47873
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2006,
0.37787
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2007,
0.38862
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2008,
0.44176
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[
2009,
0.45848
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2010,
0.36757
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[
2011,
0.40897
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[
2012,
0.42411
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[
2014,
0.34192
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2000,
9.5389
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2001,
9.612
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2002,
5.9884
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2003,
10.871
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2004,
5.3068
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2005,
7.6466
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2006,
4.678
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2007,
5.6274
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2008,
6.9627
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2009,
5.7293
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2010,
2.4138
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2011,
4.5461
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2012,
2.4896
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[
2014,
7.9713
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2000,
1.615e+06
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[
2001,
1.6274e+06
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2002,
1.0139e+06
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2003,
1.8406e+06
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[
2004,
7.5195e+05
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[
2005,
1.2947e+06
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[
2006,
7.9204e+05
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[
2007,
9.5279e+05
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[
2008,
1.1789e+06
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[
2009,
9.7005e+05
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[
2010,
4.0868e+05
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[
2011,
7.6971e+05
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[
2012,
4.2152e+05
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[
2014,
1.3478e+06
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2000,
3.3476e+05
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2001,
2.7067e+05
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2002,
2.5343e+05
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2003,
3.2372e+05
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[
2004,
1.6689e+05
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2005,
1.4419e+05
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[
2006,
1.0101e+05
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[
2007,
1.8671e+05
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[
2008,
1.4892e+05
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[
2009,
1.6678e+05
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[
2010,
35700
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[
2011,
1.1702e+05
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[
2012,
63007
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[
2014,
2.8636e+05
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],
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2000,
20.271
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[
2001,
16.456
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2002,
19.805
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2003,
18.431
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2004,
20.764
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[
2005,
16.297
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[
2006,
16.987
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2007,
20.089
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2008,
17.46
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2009,
18.32
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[
2010,
16.673
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[
2011,
18.842
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[
2012,
18.196
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[
2014,
20.425
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]
}
]
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