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nations
Raw
README.md

Motion chart of RVC data

Raw
index.html
<!DOCTYPE html>
<html class="ocks-org do-not-copy">
<meta charset="utf-8">
<title>RVC Top 75 Species </title>
<style>
@import url(../style.css?aea6f0a);
body {
background-color: white;
}
#chart {
margin-left: -40px;
height: 506px;
}
text {
font: 10px sans-serif;
}
.dot {
stroke: #000;
}
.axis path, .axis line {
fill: none;
stroke: #000;
shape-rendering: crispEdges;
}
.label {
fill: #777;
}
.year.label {
font: 500 196px "Helvetica Neue";
fill: #ddd;
}
.year.label.active {
fill: #aaa;
}
.overlay {
fill: none;
pointer-events: all;
cursor: ew-resize;
}
</style>
<header>
</header>
<h1>RVC Top 75 Species</h1>
<p id="chart"></p>
<aside>Mouseover the year to move forward and backwards through time.</aside>
<script src="//d3js.org/d3.v3.min.js" charset="utf-8"></script></script>
<script>
// Various accessors that specify the four dimensions of data to visualize.
function x(d) { return d.occurrence; }
function y(d) { return d.lbar; }
function radius(d) { return d.biomass; }
function color(d) { return d.family; }
function key(d) { return d.species; }
// Chart dimensions.
var margin = {top: 19.5, right: 19.5, bottom: 19.5, left: 39.5},
width = 960 - margin.right,
height = 500 - margin.top - margin.bottom;
// Various scales. These domains make assumptions of data, naturally.
var xScale = d3.scale.linear().domain([0, 1]).range([0, width]),
yScale = d3.scale.linear().domain([1, 50]).range([height, 0]),
radiusScale = d3.scale.linear().domain([300000, 2500000]).range([5, 40]),
colorScale = d3.scale.category20();
// The x & y axes.
var xAxis = d3.svg.axis().orient("bottom").scale(xScale).ticks(12, d3.format(",d")),
yAxis = d3.svg.axis().scale(yScale).orient("right");
// Create the SVG container and set the origin.
var svg = d3.select("#chart").append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
// Add the x-axis.
svg.append("g")
.attr("class", "x axis")
.attr("transform", "translate(0," + height + ")")
.call(xAxis);
// Add the y-axis.
svg.append("g")
.attr("class", "y axis")
.call(yAxis);
// Add an x-axis label.
svg.append("text")
.attr("class", "x label")
.attr("text-anchor", "end")
.attr("x", width)
.attr("y", height - 6)
.text("Occurrence");
// Add a y-axis label.
svg.append("text")
.attr("class", "y label")
.attr("text-anchor", "end")
.attr("y", 6)
.attr("dy", ".75em")
.attr("transform", "rotate(-90)")
.text("lbar");
// Add the year label; the value is set on transition.
var label = svg.append("text")
.attr("class", "year label")
.attr("text-anchor", "end")
.attr("y", height - (.65*height))
.attr("x", width)
.text(2000);
// Load the data.
d3.json("RVCData.json", function(nations) {
// A bisector since many nation's data is sparsely-defined.
var bisect = d3.bisector(function(d) { return d[0]; });
// Add a dot per nation. Initialize the data at 1800, and set the colors.
var dot = svg.append("g")
.attr("class", "dots")
.selectAll(".dot")
.data(interpolateData(2000))
.enter().append("circle")
.attr("class", function(d) { return "dot" + " " + d.family })
.style("fill", function(d) { return colorScale(color(d)); })
.call(position)
.sort(order)
.on("click", function(d) {
var fam = d.family;
d3.selectAll(".dot").style("opacity", 1);
d3.selectAll(".dot").filter("*:not(." + fam + ")").style("opacity", .05);
});
// Add a title.
dot.append("title")
.text(function(d) { return d.species; });
// Add an overlay for the year label.
var box = label.node().getBBox();
var overlay = svg.append("rect")
.attr("class", "overlay")
.attr("x", box.x)
.attr("y", box.y)
.attr("width", box.width)
.attr("height", box.height)
.on("mouseover", enableInteraction);
// Start a transition that interpolates the data based on year.
svg.transition()
.duration(30000)
.ease("linear")
.tween("year", tweenYear)
.each("end", enableInteraction);
// Positions the dots based on data.
function position(dot) {
dot .attr("cx", function(d) { return xScale(x(d)); })
.attr("cy", function(d) { return yScale(y(d)); })
.attr("r", function(d) { return radiusScale(radius(d)); });
}
// Defines a sort order so that the smallest dots are drawn on top.
function order(a, b) {
return radius(b) - radius(a);
}
// After the transition finishes, you can mouseover to change the year.
function enableInteraction() {
var yearScale = d3.scale.linear()
.domain([2000, 2014])
.range([box.x + 10, box.x + box.width - 10])
.clamp(true);
// Cancel the current transition, if any.
svg.transition().duration(0);
overlay
.on("mouseover", mouseover)
.on("mouseout", mouseout)
.on("mousemove", mousemove)
.on("touchmove", mousemove);
function mouseover() {
label.classed("active", true);
}
function mouseout() {
label.classed("active", false);
}
function mousemove() {
displayYear(yearScale.invert(d3.mouse(this)[0]));
}
}
// Tweens the entire chart by first tweening the year, and then the data.
// For the interpolated data, the dots and label are redrawn.
function tweenYear() {
var year = d3.interpolateNumber(2000, 2014);
return function(t) { displayYear(year(t)); };
}
// Updates the display to show the specified year.
function displayYear(year) {
dot.data(interpolateData(year), key).call(position).sort(order);
label.text(Math.round(year));
}
// Interpolates the dataset for the given (fractional) year.
function interpolateData(year) {
return nations.map(function(d) {
return {
species: d.species,
family: d.family,
lbar: interpolateValues(d.lbar, year),
biomass: interpolateValues(d.biomass, year),
occurrence: interpolateValues(d.occurrence, year)
};
});
}
// Finds (and possibly interpolates) the value for the specified year.
function interpolateValues(values, year) {
var i = bisect.left(values, year, 0, values.length - 1),
a = values[i];
if (i > 0) {
var b = values[i - 1],
t = (year - a[0]) / (b[0] - a[0]);
return a[1] * (1 - t) + b[1] * t;
}
return a[1];
}
});
</script>
<script>
GoogleAnalyticsObject = "ga", ga = function() { ga.q.push(arguments); }, ga.q = [], ga.l = +new Date;
ga("create", "UA-48272912-3", "ocks.org");
ga("send", "pageview");
</script>
<script async src="//www.google-analytics.com/analytics.js"></script>
Raw
RVCData.json
[
{
"family": "Acanthuridae",
"species": "Acanthurus bahianus",
"occurrence": [
[
2000,
0.75717
],
[
2001,
0.75153
],
[
2002,
0.80021
],
[
2003,
0.86798
],
[
2004,
0.8247
],
[
2005,
0.78359
],
[
2006,
0.75979
],
[
2007,
0.82749
],
[
2008,
0.81852
],
[
2009,
0.83874
],
[
2010,
0.76686
],
[
2011,
0.81459
],
[
2012,
0.81068
],
[
2014,
0.82815
]
],
"density": [
[
2000,
3.1516
],
[
2001,
3.3155
],
[
2002,
3.6712
],
[
2003,
3.3316
],
[
2004,
4.6335
],
[
2005,
3.6634
],
[
2006,
2.9459
],
[
2007,
3.0737
],
[
2008,
3.8709
],
[
2009,
4.2253
],
[
2010,
2.8153
],
[
2011,
2.8535
],
[
2012,
3.449
],
[
2014,
3.8515
]
],
"abundance": [
[
2000,
1.2051e+07
],
[
2001,
1.2678e+07
],
[
2002,
1.4038e+07
],
[
2003,
1.2739e+07
],
[
2004,
1.759e+07
],
[
2005,
1.4008e+07
],
[
2006,
1.1265e+07
],
[
2007,
1.1753e+07
],
[
2008,
1.4802e+07
],
[
2009,
1.6157e+07
],
[
2010,
1.0765e+07
],
[
2011,
1.0911e+07
],
[
2012,
1.3188e+07
],
[
2014,
1.4725e+07
]
],
"biomass": [
[
2000,
7.0025e+05
],
[
2001,
7.5362e+05
],
[
2002,
7.837e+05
],
[
2003,
7.4544e+05
],
[
2004,
2.1324e+06
],
[
2005,
1.1423e+06
],
[
2006,
6.8239e+05
],
[
2007,
7.405e+05
],
[
2008,
1.1327e+06
],
[
2009,
1.3236e+06
],
[
2010,
7.6087e+05
],
[
2011,
8.5751e+05
],
[
2012,
9.5988e+05
],
[
2014,
1.1202e+06
]
],
"lbar": [
[
2000,
12.138
],
[
2001,
12.359
],
[
2002,
11.801
],
[
2003,
12.465
],
[
2004,
14.382
],
[
2005,
12.412
],
[
2006,
12.333
],
[
2007,
12.44
],
[
2008,
13.714
],
[
2009,
13.922
],
[
2010,
13.017
],
[
2011,
13.977
],
[
2012,
13.48
],
[
2014,
13.704
]
]
},
{
"family": "Acanthuridae",
"species": "Acanthurus chirurgus",
"occurrence": [
[
2000,
0.62387
],
[
2001,
0.60885
],
[
2002,
0.54479
],
[
2003,
0.59639
],
[
2004,
0.58483
],
[
2005,
0.41337
],
[
2006,
0.50331
],
[
2007,
0.59426
],
[
2008,
0.57743
],
[
2009,
0.52043
],
[
2010,
0.50682
],
[
2011,
0.56824
],
[
2012,
0.49007
],
[
2014,
0.50017
]
],
"density": [
[
2000,
2.3142
],
[
2001,
2.5646
],
[
2002,
2.1514
],
[
2003,
1.9264
],
[
2004,
3.0077
],
[
2005,
1.807
],
[
2006,
1.9226
],
[
2007,
2.393
],
[
2008,
2.2977
],
[
2009,
2.1128
],
[
2010,
1.7177
],
[
2011,
1.8241
],
[
2012,
1.8763
],
[
2014,
1.7954
]
],
"abundance": [
[
2000,
8.8492e+06
],
[
2001,
9.8063e+06
],
[
2002,
8.2266e+06
],
[
2003,
7.3661e+06
],
[
2004,
1.1418e+07
],
[
2005,
6.9097e+06
],
[
2006,
7.3515e+06
],
[
2007,
9.1503e+06
],
[
2008,
8.7858e+06
],
[
2009,
8.0789e+06
],
[
2010,
6.5683e+06
],
[
2011,
6.9749e+06
],
[
2012,
7.1744e+06
],
[
2014,
6.8641e+06
]
],
"biomass": [
[
2000,
1.3657e+06
],
[
2001,
3.5054e+06
],
[
2002,
1.8416e+06
],
[
2003,
1.7808e+06
],
[
2004,
6.8986e+06
],
[
2005,
1.6161e+06
],
[
2006,
1.563e+06
],
[
2007,
2.6723e+06
],
[
2008,
1.6165e+06
],
[
2009,
1.5736e+06
],
[
2010,
9.2832e+05
],
[
2011,
1.0015e+06
],
[
2012,
1.1025e+06
],
[
2014,
1.1368e+06
]
],
"lbar": [
[
2000,
16.435
],
[
2001,
20.749
],
[
2002,
17.215
],
[
2003,
18.523
],
[
2004,
23.846
],
[
2005,
17.026
],
[
2006,
18.14
],
[
2007,
19.409
],
[
2008,
17.985
],
[
2009,
18.058
],
[
2010,
16.117
],
[
2011,
16.762
],
[
2012,
17.115
],
[
2014,
18.221
]
]
},
{
"family": "Acanthuridae",
"species": "Acanthurus coeruleus",
"occurrence": [
[
2000,
0.78357
],
[
2001,
0.73931
],
[
2002,
0.7498
],
[
2003,
0.76061
],
[
2004,
0.75207
],
[
2005,
0.69545
],
[
2006,
0.69399
],
[
2007,
0.82137
],
[
2008,
0.86312
],
[
2009,
0.83664
],
[
2010,
0.72515
],
[
2011,
0.84308
],
[
2012,
0.8547
],
[
2014,
0.79202
]
],
"density": [
[
2000,
2.7122
],
[
2001,
2.8797
],
[
2002,
2.4126
],
[
2003,
2.9296
],
[
2004,
4.0752
],
[
2005,
2.8701
],
[
2006,
2.395
],
[
2007,
2.759
],
[
2008,
3.3149
],
[
2009,
2.505
],
[
2010,
2.4385
],
[
2011,
3.0506
],
[
2012,
3.2911
],
[
2014,
3.6101
]
],
"abundance": [
[
2000,
1.0371e+07
],
[
2001,
1.1012e+07
],
[
2002,
9.2252e+06
],
[
2003,
1.1202e+07
],
[
2004,
1.547e+07
],
[
2005,
1.0975e+07
],
[
2006,
9.1581e+06
],
[
2007,
1.055e+07
],
[
2008,
1.2675e+07
],
[
2009,
9.5786e+06
],
[
2010,
9.3242e+06
],
[
2011,
1.1665e+07
],
[
2012,
1.2585e+07
],
[
2014,
1.3802e+07
]
],
"biomass": [
[
2000,
1.0446e+06
],
[
2001,
1.9089e+06
],
[
2002,
1.3462e+06
],
[
2003,
1.6528e+06
],
[
2004,
2.7397e+06
],
[
2005,
1.4172e+06
],
[
2006,
1.0186e+06
],
[
2007,
1.4532e+06
],
[
2008,
2.3337e+06
],
[
2009,
1.2383e+06
],
[
2010,
1.1401e+06
],
[
2011,
1.4064e+06
],
[
2012,
1.4745e+06
],
[
2014,
1.5667e+06
]
],
"lbar": [
[
2000,
13.45
],
[
2001,
15.897
],
[
2002,
15.249
],
[
2003,
14.853
],
[
2004,
17.292
],
[
2005,
14.172
],
[
2006,
13.933
],
[
2007,
14.728
],
[
2008,
16.492
],
[
2009,
14.889
],
[
2010,
14.38
],
[
2011,
14.976
],
[
2012,
14.278
],
[
2014,
14.894
]
]
},
{
"family": "Aulostomidae",
"species": "Aulostomus maculatus",
"occurrence": [
[
2000,
0.1272
],
[
2001,
0.13461
],
[
2002,
0.18459
],
[
2003,
0.24074
],
[
2004,
0.1599
],
[
2005,
0.19523
],
[
2006,
0.11371
],
[
2007,
0.12539
],
[
2008,
0.19468
],
[
2009,
0.17305
],
[
2010,
0.13336
],
[
2011,
0.17448
],
[
2012,
0.17934
],
[
2014,
0.14389
]
],
"density": [
[
2000,
0.10144
],
[
2001,
0.086301
],
[
2002,
0.15093
],
[
2003,
0.21036
],
[
2004,
0.10388
],
[
2005,
0.17275
],
[
2006,
0.097899
],
[
2007,
0.076719
],
[
2008,
0.14163
],
[
2009,
0.11548
],
[
2010,
0.089438
],
[
2011,
0.13957
],
[
2012,
0.12473
],
[
2014,
0.11118
]
],
"abundance": [
[
2000,
3.8788e+05
],
[
2001,
3.3e+05
],
[
2002,
5.7712e+05
],
[
2003,
8.0439e+05
],
[
2004,
3.9433e+05
],
[
2005,
6.6056e+05
],
[
2006,
3.7435e+05
],
[
2007,
2.9336e+05
],
[
2008,
5.4158e+05
],
[
2009,
4.4158e+05
],
[
2010,
3.4199e+05
],
[
2011,
5.3368e+05
],
[
2012,
4.7695e+05
],
[
2014,
4.2508e+05
]
],
"biomass": [
[
2000,
63183
],
[
2001,
45791
],
[
2002,
1.3161e+05
],
[
2003,
2.2183e+05
],
[
2004,
81265
],
[
2005,
1.0988e+05
],
[
2006,
73509
],
[
2007,
57803
],
[
2008,
1.2137e+05
],
[
2009,
1.3931e+05
],
[
2010,
73680
],
[
2011,
78248
],
[
2012,
1.1832e+05
],
[
2014,
61002
]
],
"lbar": [
[
2000,
23.531
],
[
2001,
21.639
],
[
2002,
32.488
],
[
2003,
37.782
],
[
2004,
36.735
],
[
2005,
33.867
],
[
2006,
34.095
],
[
2007,
34.887
],
[
2008,
36.101
],
[
2009,
37.99
],
[
2010,
36.672
],
[
2011,
33.371
],
[
2012,
38.038
],
[
2014,
32.644
]
]
},
{
"family": "Carangidae",
"species": "Caranx bartholomaei",
"occurrence": [
[
2000,
0.096879
],
[
2001,
0.10888
],
[
2002,
0.087455
],
[
2003,
0.098959
],
[
2004,
0.15375
],
[
2005,
0.12331
],
[
2006,
0.086351
],
[
2007,
0.081312
],
[
2008,
0.11159
],
[
2009,
0.080467
],
[
2010,
0.03298
],
[
2011,
0.048466
],
[
2012,
0.092787
],
[
2014,
0.051212
]
],
"density": [
[
2000,
0.17253
],
[
2001,
0.77724
],
[
2002,
0.32705
],
[
2003,
0.32147
],
[
2004,
0.80462
],
[
2005,
0.44275
],
[
2006,
0.40313
],
[
2007,
0.30559
],
[
2008,
0.52685
],
[
2009,
0.24542
],
[
2010,
0.062845
],
[
2011,
0.13361
],
[
2012,
0.27209
],
[
2014,
0.64278
]
],
"abundance": [
[
2000,
6.5971e+05
],
[
2001,
2.972e+06
],
[
2002,
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2014,
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2001,
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2005,
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2006,
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2012,
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2014,
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2012,
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2014,
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2011,
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2012,
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2001,
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2005,
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2010,
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2011,
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2012,
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2014,
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}
]
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