Created
May 8, 2024 15:52
-
-
Save jfgrimm/2cbd6153aea71a499369bfff858d729d to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /tmp/eb-vh4px4um/files_pr20496/p/PSM2/PSM2-12.0.1-GCCcore-12.3.0.eb (PR(s) #20496)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| == 2024-05-08 16:52:18,838 easyblock.py:313 INFO This is EasyBuild 4.9.1 (framework: 4.9.1, easyblocks: 4.9.1) on host node109.viking2.yor.alces.network. | |
| == 2024-05-08 16:52:18,838 easyblock.py:319 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/opt/apps/eb/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/easyblocks/generic/configuremake.py) | |
| == 2024-05-08 16:52:18,838 easyblock.py:1056 INFO Build dir set to /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0 | |
| == 2024-05-08 16:52:18,838 easyblock.py:1113 INFO Software install dir set to /mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0 | |
| == 2024-05-08 16:52:18,839 easyblock.py:1118 INFO Module install dir set to /mnt/scratch/users/jfg508/eb/modules/all | |
| == 2024-05-08 16:52:18,839 easyblock.py:288 INFO Init completed for application name PSM2 version 12.0.1 | |
| == 2024-05-08 16:52:18,839 easyblock.py:4234 INFO Obtained application instance of for PSM2 (easyblock: ConfigureMake) | |
| == 2024-05-08 16:52:18,839 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:18,839 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:18,840 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2024-05-08 16:52:18,840 one.py:180 INFO Skipping reformatting value for parameter 'toolchainopts' | |
| == 2024-05-08 16:52:18,841 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/reprod_20240508165218_2532657 (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:18,841 easyblock.py:4488 INFO Dumped easyconfig instance to /tmp/eb-vh4px4um/reprod_20240508165218_2532657/PSM2-12.0.1-GCCcore-12.3.0.eb | |
| == 2024-05-08 16:52:18,841 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/reprod_20240508165218_2532657/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:18,842 filetools.py:2425 INFO /opt/apps/eb/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-vh4px4um/reprod_20240508165218_2532657/easyblocks/configuremake.py | |
| == 2024-05-08 16:52:18,842 easyblock.py:4468 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-vh4px4um/reprod_20240508165218_2532657/easyblocks | |
| == 2024-05-08 16:52:18,842 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/reprod_20240508165218_2532657/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:18,842 filetools.py:2425 INFO /users/jfg508/eb//uoy-easyconfigs/hooks/viking_hooks.py copied to /tmp/eb-vh4px4um/reprod_20240508165218_2532657/hooks/viking_hooks.py | |
| == 2024-05-08 16:52:18,842 easyblock.py:4500 INFO Dumped hooks file /users/jfg508/eb//uoy-easyconfigs/hooks/viking_hooks.py which is (potentially) required for reproduction to /tmp/eb-vh4px4um/reprod_20240508165218_2532657/hooks/viking_hooks.py | |
| == 2024-05-08 16:52:18,842 filetools.py:1764 INFO Adjusting permissions recursively for /mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0 | |
| == 2024-05-08 16:52:18,843 easyblock.py:2239 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2024-05-08 16:52:18,843 build_log.py:267 INFO building and installing PSM2/12.0.1-GCCcore-12.3.0... | |
| == 2024-05-08 16:52:18,843 filetools.py:2005 INFO Lock /mnt/scratch/users/jfg508/eb/software/.locks/_mnt_scratch_users_jfg508_eb_software_PSM2_12.0.1-GCCcore-12.3.0.lock does not exist | |
| == 2024-05-08 16:52:18,844 filetools.py:1946 INFO Creating lock at /mnt/scratch/users/jfg508/eb/software/.locks/_mnt_scratch_users_jfg508_eb_software_PSM2_12.0.1-GCCcore-12.3.0.lock... | |
| == 2024-05-08 16:52:18,844 filetools.py:1912 INFO Creating directory /mnt/scratch/users/jfg508/eb/software/.locks/_mnt_scratch_users_jfg508_eb_software_PSM2_12.0.1-GCCcore-12.3.0.lock (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:18,844 filetools.py:1955 INFO Lock created: /mnt/scratch/users/jfg508/eb/software/.locks/_mnt_scratch_users_jfg508_eb_software_PSM2_12.0.1-GCCcore-12.3.0.lock | |
| == 2024-05-08 16:52:18,845 build_log.py:267 INFO fetching files... | |
| == 2024-05-08 16:52:18,845 easyblock.py:3956 INFO Starting fetch step | |
| == 2024-05-08 16:52:18,845 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:18,845 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', builddir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', installdir='/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:18,845 easyblock.py:3964 INFO Running method fetch_step part of step fetch | |
| == 2024-05-08 16:52:18,845 easyblock.py:2361 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2024-05-08 16:52:18,845 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for PSM2_12.0.1.tar.gz: /tmp/eb-vh4px4um/files_pr20496/p/PSM2 | |
| == 2024-05-08 16:52:18,845 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /opt/apps/eb/software/EasyBuild/4.9.1/bin/eb | |
| == 2024-05-08 16:52:18,846 tools.py:288 INFO Also considering installation prefix /opt/apps/eb/software/EasyBuild/4.9.1 (determined via path to 'eb' script)... | |
| == 2024-05-08 16:52:18,846 easyblock.py:851 INFO Found file PSM2_12.0.1.tar.gz at /opt/apps/eb/pkg/p/PSM2/PSM2_12.0.1.tar.gz | |
| == 2024-05-08 16:52:18,846 easyblock.py:496 INFO Added sources: [{'name': 'PSM2_12.0.1.tar.gz', 'path': '/opt/apps/eb/pkg/p/PSM2/PSM2_12.0.1.tar.gz', 'cmd': None, 'checksum': 'e41af2d7d36a6ab67639ecbd5c1012aa20b2b464bf5cfbdac60e7eb37bfe58de', 'finalpath': '/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0'}] | |
| == 2024-05-08 16:52:18,846 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for PSM2-11.2.80_hfi-user.patch: /tmp/eb-vh4px4um/files_pr20496/p/PSM2 | |
| == 2024-05-08 16:52:18,846 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /opt/apps/eb/software/EasyBuild/4.9.1/bin/eb | |
| == 2024-05-08 16:52:18,846 tools.py:288 INFO Also considering installation prefix /opt/apps/eb/software/EasyBuild/4.9.1 (determined via path to 'eb' script)... | |
| == 2024-05-08 16:52:18,847 easyblock.py:851 INFO Found file PSM2-11.2.80_hfi-user.patch at /tmp/eb-vh4px4um/files_pr20496/p/PSM2/PSM2-11.2.80_hfi-user.patch | |
| == 2024-05-08 16:52:18,847 easyblock.py:535 INFO Added patches: [{'name': 'PSM2-11.2.80_hfi-user.patch', 'level': 1, 'postinstall': False, 'path': '/tmp/eb-vh4px4um/files_pr20496/p/PSM2/PSM2-11.2.80_hfi-user.patch', 'checksum': '7c97f9dc3b2a6f0e5b5d80abca87d44771f03c0895fa363229398de6df4b0884'}] | |
| == 2024-05-08 16:52:18,848 easyblock.py:2414 INFO md5 checksum for /opt/apps/eb/pkg/p/PSM2/PSM2_12.0.1.tar.gz: f9c6d37a018d38fdee691fdcc84be834 | |
| == 2024-05-08 16:52:18,849 easyblock.py:2414 INFO sha256 checksum for /opt/apps/eb/pkg/p/PSM2/PSM2_12.0.1.tar.gz: e41af2d7d36a6ab67639ecbd5c1012aa20b2b464bf5cfbdac60e7eb37bfe58de | |
| == 2024-05-08 16:52:18,849 easyblock.py:2414 INFO md5 checksum for /tmp/eb-vh4px4um/files_pr20496/p/PSM2/PSM2-11.2.80_hfi-user.patch: aed9863630fd533d40de18166b1a1ab8 | |
| == 2024-05-08 16:52:18,849 easyblock.py:2414 INFO sha256 checksum for /tmp/eb-vh4px4um/files_pr20496/p/PSM2/PSM2-11.2.80_hfi-user.patch: 7c97f9dc3b2a6f0e5b5d80abca87d44771f03c0895fa363229398de6df4b0884 | |
| == 2024-05-08 16:52:18,849 easyblock.py:2449 INFO Checking dirs that need to be created: ['/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', '/mnt/scratch/users/jfg508/eb/modules/all/PSM2', '/mnt/scratch/users/jfg508/eb/modules/lib/PSM2'] | |
| == 2024-05-08 16:52:18,850 configuremake.py:96 INFO config.guess version: 2018-08-29 (last updated: 2024-04-23T14:11:34, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2024-05-08 16:52:18,850 configuremake.py:151 INFO Found config.guess at /mnt/scratch/users/jfg508/eb//pkg/generic/eb_v4.9.1/ConfigureMake/config.guess | |
| == 2024-05-08 16:52:18,850 build_log.py:267 INFO ... (took < 1 sec) | |
| == 2024-05-08 16:52:18,850 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2024-05-08 16:52:18,850 easyblock.py:3956 INFO Starting ready step | |
| == 2024-05-08 16:52:18,850 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:18,851 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', builddir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', installdir='/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:18,851 easyblock.py:3964 INFO Running method check_readiness_step part of step ready | |
| == 2024-05-08 16:52:18,851 easyblock.py:2258 INFO Setting parallelism: 16 | |
| == 2024-05-08 16:52:18,890 easyblock.py:2310 WARNING Loaded modules detected: ['EasyBuild/4.9.1'] | |
| == 2024-05-08 16:52:18,891 easyblock.py:3964 INFO Running method make_builddir part of step ready | |
| == 2024-05-08 16:52:18,891 easyblock.py:1138 INFO Found old directory /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0 | |
| == 2024-05-08 16:52:18,894 filetools.py:383 INFO Path /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0 successfully removed. | |
| == 2024-05-08 16:52:18,894 easyblock.py:1146 INFO Removed old directory /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0 | |
| == 2024-05-08 16:52:18,894 filetools.py:1912 INFO Creating directory /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0 (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:18,894 easyblock.py:3964 INFO Running method reset_env part of step ready | |
| == 2024-05-08 16:52:18,894 easyblock.py:3964 INFO Running method handle_iterate_opts part of step ready | |
| == 2024-05-08 16:52:18,895 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:18,895 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', builddir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', installdir='/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', parallel='16', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:18,895 build_log.py:267 INFO ... (took < 1 sec) | |
| == 2024-05-08 16:52:18,895 build_log.py:267 INFO unpacking... | |
| == 2024-05-08 16:52:18,895 easyblock.py:3956 INFO Starting source step | |
| == 2024-05-08 16:52:18,895 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:18,896 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', builddir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', installdir='/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', parallel='16', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:18,896 easyblock.py:3964 INFO Running method checksum_step part of step source | |
| == 2024-05-08 16:52:18,897 easyblock.py:2467 INFO Checksum verification for /opt/apps/eb/pkg/p/PSM2/PSM2_12.0.1.tar.gz using e41af2d7d36a6ab67639ecbd5c1012aa20b2b464bf5cfbdac60e7eb37bfe58de passed. | |
| == 2024-05-08 16:52:18,897 easyblock.py:2467 INFO Checksum verification for /tmp/eb-vh4px4um/files_pr20496/p/PSM2/PSM2-11.2.80_hfi-user.patch using 7c97f9dc3b2a6f0e5b5d80abca87d44771f03c0895fa363229398de6df4b0884 passed. | |
| == 2024-05-08 16:52:18,897 easyblock.py:3964 INFO Running method extract_step part of step source | |
| == 2024-05-08 16:52:18,897 easyblock.py:2579 INFO Unpacking source PSM2_12.0.1.tar.gz | |
| == 2024-05-08 16:52:18,897 run.py:247 INFO running cmd: tar xzf /opt/apps/eb/pkg/p/PSM2/PSM2_12.0.1.tar.gz | |
| == 2024-05-08 16:52:18,922 build_log.py:267 INFO ... (took < 1 sec) | |
| == 2024-05-08 16:52:18,922 build_log.py:267 INFO patching... | |
| == 2024-05-08 16:52:18,922 easyblock.py:3956 INFO Starting patch step | |
| == 2024-05-08 16:52:18,922 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:18,923 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', builddir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', installdir='/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', parallel='16', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:18,923 easyblock.py:3964 INFO Running method patch_step part of step patch | |
| == 2024-05-08 16:52:18,923 easyblock.py:2597 INFO Applying patch PSM2-11.2.80_hfi-user.patch | |
| == 2024-05-08 16:52:18,923 run.py:247 INFO running cmd: patch -p1 -i /tmp/eb-vh4px4um/files_pr20496/p/PSM2/PSM2-11.2.80_hfi-user.patch | |
| == 2024-05-08 16:52:18,930 build_log.py:267 INFO ... (took < 1 sec) | |
| == 2024-05-08 16:52:18,930 build_log.py:267 INFO preparing... | |
| == 2024-05-08 16:52:18,931 easyblock.py:3956 INFO Starting prepare step | |
| == 2024-05-08 16:52:18,931 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:18,931 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', builddir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', installdir='/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', parallel='16', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:18,931 easyblock.py:3964 INFO Running method prepare_step part of step prepare | |
| == 2024-05-08 16:52:18,933 modules.py:626 INFO Checking whether CUDA/12.1.1 exists... | |
| == 2024-05-08 16:52:18,933 modules.py:631 INFO Module CUDA/12.1.1 exists (found in list of available modules) | |
| == 2024-05-08 16:52:18,933 modules.py:654 INFO Result for existence check of CUDA/12.1.1 module: True | |
| == 2024-05-08 16:52:18,933 modules.py:626 INFO Checking whether numactl/2.0.16-GCCcore-12.3.0 exists... | |
| == 2024-05-08 16:52:18,933 modules.py:631 INFO Module numactl/2.0.16-GCCcore-12.3.0 exists (found in list of available modules) | |
| == 2024-05-08 16:52:18,933 modules.py:654 INFO Result for existence check of numactl/2.0.16-GCCcore-12.3.0 module: True | |
| == 2024-05-08 16:52:18,933 modules.py:626 INFO Checking whether GCCcore/12.3.0 exists... | |
| == 2024-05-08 16:52:18,933 modules.py:634 INFO Module GCCcore/12.3.0 not found in list of available modules, checking via 'module show'... | |
| == 2024-05-08 16:52:20,130 modules.py:654 INFO Result for existence check of GCCcore/12.3.0 module: True | |
| == 2024-05-08 16:52:22,666 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /opt/apps/eb/software/CUDA/12.1.1/nvvm/lib64:/opt/apps/eb/software/CUDA/12.1.1/extras/CUPTI/lib64:/opt/apps/eb/software/CUDA/12.1.1/lib:/opt/apps/eb/software/GCCcore/12.3.0/lib64 (previous value: '/opt/apps/eb/software/CUDA/12.1.1/nvvm/lib64:/opt/apps/eb/software/CUDA/12.1.1/extras/CUPTI/lib64:/opt/apps/eb/software/CUDA/12.1.1/lib') | |
| == 2024-05-08 16:52:23,866 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/lib:/opt/apps/eb/software/CUDA/12.1.1/nvvm/lib64:/opt/apps/eb/software/CUDA/12.1.1/extras/CUPTI/lib64:/opt/apps/eb/software/CUDA/12.1.1/lib:/opt/apps/eb/software/GCCcore/12.3.0/lib64 (previous value: '/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/lib') | |
| == 2024-05-08 16:52:23,866 modules.py:626 INFO Checking whether GCCcore/12.3.0 exists... | |
| == 2024-05-08 16:52:23,866 modules.py:634 INFO Module GCCcore/12.3.0 not found in list of available modules, checking via 'module show'... | |
| == 2024-05-08 16:52:23,866 modules.py:654 INFO Result for existence check of GCCcore/12.3.0 module: True | |
| == 2024-05-08 16:52:23,867 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2024-05-08 16:52:23,868 compiler.py:339 INFO _set_optimal_architecture: no optarch found for compiler GCC. Ignoring option. | |
| == 2024-05-08 16:52:23,868 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/AMD. | |
| == 2024-05-08 16:52:23,871 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2024-05-08 16:52:23,871 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable CPPFLAGS set to -I/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/include -I/opt/apps/eb/software/CUDA/12.1.1/include (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/include -I/opt/apps/eb/software/CUDA/12.1.1/include (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2024-05-08 16:52:23,872 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable LDFLAGS set to -L/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/lib64 -L/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/lib -L/opt/apps/eb/software/CUDA/12.1.1/lib64 -L/opt/apps/eb/software/CUDA/12.1.1/lib -L/opt/apps/eb/software/GCCcore/12.3.0/lib64 -L/opt/apps/eb/software/GCCcore/12.3.0/lib (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/lib64 -L/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/lib -L/opt/apps/eb/software/CUDA/12.1.1/lib64 -L/opt/apps/eb/software/CUDA/12.1.1/lib -L/opt/apps/eb/software/GCCcore/12.3.0/lib64 -L/opt/apps/eb/software/GCCcore/12.3.0/lib (previously undefined) | |
| == 2024-05-08 16:52:23,873 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2024-05-08 16:52:23,874 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2024-05-08 16:52:23,874 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-05-08 16:52:23,874 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-05-08 16:52:23,874 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-05-08 16:52:23,874 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-05-08 16:52:23,874 toolchain.py:961 INFO Putting RPATH wrappers in place... | |
| == 2024-05-08 16:52:23,874 filetools.py:526 INFO Command gcc found at /opt/apps/eb/software/GCCcore/12.3.0/bin/gcc | |
| == 2024-05-08 16:52:23,875 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:23,875 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper/gcc | |
| == 2024-05-08 16:52:23,875 environment.py:93 INFO Environment variable PATH set to /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin (previous value: '/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin') | |
| == 2024-05-08 16:52:23,875 filetools.py:526 INFO Command gcc found at /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper/gcc | |
| == 2024-05-08 16:52:23,875 toolchain.py:1045 INFO RPATH wrapper script for /opt/apps/eb/software/GCCcore/12.3.0/bin/gcc: /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper/gcc (log: /dev/null) | |
| == 2024-05-08 16:52:23,876 filetools.py:526 INFO Command g++ found at /opt/apps/eb/software/GCCcore/12.3.0/bin/g++ | |
| == 2024-05-08 16:52:23,876 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:23,876 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper/g++ | |
| == 2024-05-08 16:52:23,876 environment.py:93 INFO Environment variable PATH set to /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin (previous value: '/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin') | |
| == 2024-05-08 16:52:23,876 filetools.py:526 INFO Command g++ found at /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper/g++ | |
| == 2024-05-08 16:52:23,876 toolchain.py:1045 INFO RPATH wrapper script for /opt/apps/eb/software/GCCcore/12.3.0/bin/g++: /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper/g++ (log: /dev/null) | |
| == 2024-05-08 16:52:23,877 filetools.py:526 INFO Command gfortran found at /opt/apps/eb/software/GCCcore/12.3.0/bin/gfortran | |
| == 2024-05-08 16:52:23,877 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:23,877 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper/gfortran | |
| == 2024-05-08 16:52:23,877 environment.py:93 INFO Environment variable PATH set to /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin (previous value: '/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin') | |
| == 2024-05-08 16:52:23,877 filetools.py:526 INFO Command gfortran found at /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper/gfortran | |
| == 2024-05-08 16:52:23,878 toolchain.py:1045 INFO RPATH wrapper script for /opt/apps/eb/software/GCCcore/12.3.0/bin/gfortran: /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper/gfortran (log: /dev/null) | |
| == 2024-05-08 16:52:23,878 filetools.py:526 INFO Command ld found at /usr/bin/ld | |
| == 2024-05-08 16:52:23,878 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:23,878 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper/ld | |
| == 2024-05-08 16:52:23,878 environment.py:93 INFO Environment variable PATH set to /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin (previous value: '/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin') | |
| == 2024-05-08 16:52:23,878 filetools.py:526 INFO Command ld found at /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper/ld | |
| == 2024-05-08 16:52:23,878 toolchain.py:1045 INFO RPATH wrapper script for /usr/bin/ld: /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper/ld (log: /dev/null) | |
| == 2024-05-08 16:52:23,879 filetools.py:526 INFO Command ld.gold found at /usr/bin/ld.gold | |
| == 2024-05-08 16:52:23,879 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.gold_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:23,879 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.gold_wrapper/ld.gold | |
| == 2024-05-08 16:52:23,879 environment.py:93 INFO Environment variable PATH set to /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.gold_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin (previous value: '/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin') | |
| == 2024-05-08 16:52:23,879 filetools.py:526 INFO Command ld.gold found at /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.gold_wrapper/ld.gold | |
| == 2024-05-08 16:52:23,879 toolchain.py:1045 INFO RPATH wrapper script for /usr/bin/ld.gold: /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.gold_wrapper/ld.gold (log: /dev/null) | |
| == 2024-05-08 16:52:23,880 filetools.py:526 INFO Command ld.bfd found at /usr/bin/ld.bfd | |
| == 2024-05-08 16:52:23,880 filetools.py:1912 INFO Creating directory /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.bfd_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-05-08 16:52:23,880 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.bfd_wrapper/ld.bfd | |
| == 2024-05-08 16:52:23,880 environment.py:93 INFO Environment variable PATH set to /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.bfd_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.gold_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin (previous value: '/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.gold_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gfortran_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gxx_wrapper:/tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/gcc_wrapper:/opt/apps/eb/software/numactl/2.0.16-GCCcore-12.3.0/bin:/opt/apps/eb/software/CUDA/12.1.1/nvvm/bin:/opt/apps/eb/software/CUDA/12.1.1/bin:/opt/apps/eb/software/GCCcore/12.3.0/bin:/opt/apps/eb/software/EasyBuild/4.9.1/bin:/users/jfg508/.local/bin:/users/jfg508/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin') | |
| == 2024-05-08 16:52:23,880 filetools.py:526 INFO Command ld.bfd found at /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.bfd_wrapper/ld.bfd | |
| == 2024-05-08 16:52:23,880 toolchain.py:1045 INFO RPATH wrapper script for /usr/bin/ld.bfd: /tmp/eb-vh4px4um/tmpus7rryni/rpath_wrappers/ld.bfd_wrapper/ld.bfd (log: /dev/null) | |
| == 2024-05-08 16:52:23,880 easyblock.py:1181 INFO Enabling CUDA PTX cache of size 1024 MiB at /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/eb-cuda-cache | |
| == 2024-05-08 16:52:23,881 environment.py:93 INFO Environment variable CUDA_CACHE_DISABLE set to 0 (previously undefined) | |
| == 2024-05-08 16:52:23,881 environment.py:93 INFO Environment variable CUDA_CACHE_PATH set to /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/eb-cuda-cache (previously undefined) | |
| == 2024-05-08 16:52:23,881 environment.py:93 INFO Environment variable CUDA_CACHE_MAXSIZE set to 1073741824 (previously undefined) | |
| == 2024-05-08 16:52:23,881 easyblock.py:2142 INFO Using /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ as start dir | |
| == 2024-05-08 16:52:23,881 build_log.py:267 INFO ... (took 4 secs) | |
| == 2024-05-08 16:52:23,881 easyblock.py:3917 INFO Skipping configure step (skip: None, skipsteps: ['configure']) | |
| == 2024-05-08 16:52:23,881 build_log.py:267 INFO configuring [skipped] | |
| == 2024-05-08 16:52:23,881 build_log.py:267 INFO building... | |
| == 2024-05-08 16:52:23,881 easyblock.py:3956 INFO Starting build step | |
| == 2024-05-08 16:52:23,881 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-05-08 16:52:23,882 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='psm2', builddir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0', cuda_cc_cmake='86;90', cuda_cc_semicolon_sep='8.6;9.0', cuda_cc_space_sep='8.6 9.0', cuda_compute_capabilities='8.6,9.0', cuda_sm_comma_sep='sm_86,sm_90', cuda_sm_space_sep='sm_86 sm_90', cudamajver='12', cudaminver='1', cudashortver='12.1', cudaver='12.1.1', github_account='psm2', installdir='/mnt/scratch/users/jfg508/eb/software/PSM2/12.0.1-GCCcore-12.3.0', module_name='PSM2/12.0.1-GCCcore-12.3.0', name='PSM2', nameletter='P', nameletterlower='p', namelower='psm2', parallel='16', start_dir='/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='12.0.1', version_major='12', version_major_minor='12.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2024-05-08 16:52:23,882 easyblock.py:3964 INFO Running method build_step part of step build | |
| == 2024-05-08 16:52:23,882 configuremake.py:352 INFO Building target '' | |
| == 2024-05-08 16:52:23,882 run.py:247 INFO running cmd: sed -i 's|fprintf(stderr,|_HFI_DBG(|' psm_context.c && sed -i 's|/usr|/|' Makefile && make -j 16 arch=x86_64 USE_PSM_UUID=1 PSM_CUDA=1 WERROR= | |
| == 2024-05-08 16:52:24,448 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): cmd "sed -i 's|fprintf(stderr,|_HFI_DBG(|' psm_context.c && sed -i 's|/usr|/|' Makefile && make -j 16 arch=x86_64 USE_PSM_UUID=1 PSM_CUDA=1 WERROR=" exited with exit code 2 and output: | |
| mkdir -p /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release | |
| # Our buildflags.mak exports all variables, all are propogated to submakes. | |
| make[1]: warning: -j32 forced in submake: resetting jobserver mode. | |
| make[1]: Entering directory '/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_self' | |
| gcc -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -pthread -Wall -mavx2 -D_DEFAULT_SOURCE -D_SVID_SOURCE -D_BSD_SOURCE -O3 -g3 -DNVIDIA_GPU_DIRECT -DPSM_CUDA -fpic -fPIC -D_GNU_SOURCE -funwind-tables -Wno-strict-aliasing -Wformat-security -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/include -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/mpspawn -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/include/linux-x86_64 -I/usr/include/uapi -I/opt/apps/eb/software/CUDA/12.1.1/include -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1 -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_ips -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_self/.. /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_self/ptl.c -MM -MF /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release/ptl_self/ptl.d -MQ /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release/ptl_self/ptl.o | |
| gcc -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -pthread -Wall -mavx2 -D_DEFAULT_SOURCE -D_SVID_SOURCE -D_BSD_SOURCE -O3 -g3 -DNVIDIA_GPU_DIRECT -DPSM_CUDA -fpic -fPIC -D_GNU_SOURCE -funwind-tables -Wno-strict-aliasing -Wformat-security -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/include -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/mpspawn -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/include/linux-x86_64 -I/usr/include/uapi -I/opt/apps/eb/software/CUDA/12.1.1/include -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1 -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_ips -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release -I/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_self/.. -c /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_self/ptl.c -o /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release/ptl_self/ptl.o | |
| as: unrecognized option '--gdwarf-5' | |
| make[1]: *** [Makefile:73: /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release/ptl_self/ptl.o] Error 1 | |
| make[1]: Leaving directory '/dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/ptl_self' | |
| make: *** [Makefile:301: all] Error 1 | |
| (at easybuild/tools/run.py:682 in parse_cmd_output) | |
| == 2024-05-08 16:52:24,449 build_log.py:267 INFO ... (took < 1 sec) | |
| == 2024-05-08 16:52:24,449 filetools.py:2013 INFO Removing lock /mnt/scratch/users/jfg508/eb/software/.locks/_mnt_scratch_users_jfg508_eb_software_PSM2_12.0.1-GCCcore-12.3.0.lock... | |
| == 2024-05-08 16:52:24,450 filetools.py:383 INFO Path /mnt/scratch/users/jfg508/eb/software/.locks/_mnt_scratch_users_jfg508_eb_software_PSM2_12.0.1-GCCcore-12.3.0.lock successfully removed. | |
| == 2024-05-08 16:52:24,450 filetools.py:2017 INFO Lock removed: /mnt/scratch/users/jfg508/eb/software/.locks/_mnt_scratch_users_jfg508_eb_software_PSM2_12.0.1-GCCcore-12.3.0.lock | |
| == 2024-05-08 16:52:24,451 easyblock.py:4291 WARNING build failed (first 300 chars): cmd "sed -i 's|fprintf(stderr,|_HFI_DBG(|' psm_context.c && sed -i 's|/usr|/|' Makefile && make -j 16 arch=x86_64 USE_PSM_UUID=1 PSM_CUDA=1 WERROR=" exited with exit code 2 and output: | |
| mkdir -p /dev/shm/jfg508/PSM2/12.0.1/GCCcore-12.3.0/opa-psm2-PSM2_12.0.1/build_release | |
| # Our buildflags.mak expor | |
| == 2024-05-08 16:52:24,451 easyblock.py:328 INFO Closing log for application name PSM2 version 12.0.1 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment