jfy133

/*
    Completely ripped off from Mahesh Binzer-Panchal, all cookies too him!
    
    Important: remove views before copy pasting!
    
*/

// These should be params
def outdir = '/home/james/Downloads/results/'
def format = 'tsv'

jfy133

#!/usr/bin/env R

library(tidyverse)

min_commit_count <- 5

## Get raw data: ` git --no-pager log --pretty=format:"%h%x09%an%x09%ad%x09%s" --date=iso | cut -f 2-3 > pipeline_contribs.tsv

data_raw <- read_tsv("pipeline_contribs.tsv", col_names = c("Committer", "Date"))

jfy133

{
  "$schema": "https://raw.githubusercontent.com/jsonresume/resume-schema/v1.0.0/schema.json",
  "basics": {
    "name": "Dr. rer. nat. James A. Fellows Yates",
    "label": "Bioinformatician and Biomolecular Archaeologist",
    "image": "",
    "email": "jfy133@gmail.com",
    "url": "http://www.jafy.eu/",
    "summary": "James is a biomolecular archaeologist turned bioinformatician. His research is currently the metagenomic analysis of next generation sequencing data of ancient microbiomes. He leads the development of a range of open-source tools including the nextflow best-practices pipeline nf-core/eager, as well as packages in R and R and shiny. He is a core member of the nf-core bioinformatics pipeline initiative and the founder of the SPAAM community of ancient metagenomics researchers.",
    "location": {

jfy133

library(jsonlite)

myjson <- read_json("https://github.com/nf-core/eager/raw/dev/nextflow_schema.json")

fileConn <- '~/Downloads/usage.md'

write(paste("# Usage"), file = fileConn, append=T)


for ( cat in names(myjson$definitions) ) {