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gistfile1.txt
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.link {
stroke: #999;
stroke-width: 2px;
}
marker {
fill: #999;
}
.MXFunction circle {
stroke: black;
}
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stroke: black;
stroke-width: 2px;
stroke-dasharray: 5,5;
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.cell rect {
fill: red;
}
.cell rect.call {
fill: white;
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.cell rect.overhead {
fill: #ffcccc;
}
.node circle {
fill: #eee;
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</style></head><body>
<div id='chart3'></div>
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476924240: {name:"derivative_slicot_0_52", type:'MXFunction', stats: {total_time: 3.19238, external_time: 2.42502, overhead_time: 0.0700443, count: 31, ops : [{ name: 'assign', n : 0, time: 0}, { name: 'add', n : 1040, time: 0.017596}, { name: 'sub', n : 0, time: 0}, { name: 'mul', n : 0, time: 0}, { name: 'div', n : 52, time: 0.0241974}, { name: 'neg', n : 0, time: 0}, { name: 'exp', n : 0, time: 0}, { name: 'log', n : 0, time: 0}, { name: 'pow', n : 0, time: 0}, { name: 'constpow', n : 0, time: 0}, { name: 'sqrt', n : 0, time: 0}, { name: 'sq', n : 0, time: 0}, { name: 'twice', n : 1040, time: 0.0182386}, { name: 'sin', n : 0, time: 0}, { name: 'cos', n : 0, time: 0}, { name: 'tan', n : 0, time: 0}, { name: 'asin', n : 0, time: 0}, { name: 'acos', n : 0, time: 0}, { name: 'atan', n : 0, time: 0}, { name: 'lt', n : 0, time: 0}, { name: 'le', n : 0, time: 0}, { name: 'eq', n : 0, time: 0}, { name: 'ne', n : 0, time: 0}, { name: 'not', n : 0, time: 0}, { name: 'and', n : 0, time: 0}, { name: 'or', n : 0, time: 0}, { name: 'floor', n : 0, time: 0}, { name: 'ceil', n : 0, time: 0}, { name: 'fmod', n : 0, time: 0}, { name: 'fabs', n : 0, time: 0}, { name: 'sign', n : 0, time: 0}, { name: 'copysign', n : 0, time: 0}, { name: 'if_else_zero', n : 0, time: 0}, { name: 'erf', n : 0, time: 0}, { name: 'fmin', n : 0, time: 0}, { name: 'fmax', n : 0, time: 0}, { name: 'inv', n : 0, time: 0}, { name: 'sinh', n : 0, time: 0}, { name: 'cosh', n : 0, time: 0}, { name: 'tanh', n : 0, time: 0}, { name: 'asinh', n : 0, time: 0}, { name: 'acosh', n : 0, time: 0}, { name: 'atanh', n : 0, time: 0}, { name: 'atan2', n : 0, time: 0}, { name: 'const', n : 2132, time: 0.0172565}, { name: 'input', n : 54, time: 0.0126968}, { name: 'output', n : 105, time: 0.0186122}, { name: 'parameter', n : 0, time: 0}, { name: 'call', n : 2, time: 2.42502, dependency: 0}, { name: 'matmul', n : 2080, time: 0.544475}, { name: 'solve', n : 0, time: 0}, { name: 'transpose', n : 1040, time: 0.0156751}, { name: 'determinant', n : 0, time: 0}, { name: 'inverse', n : 0, time: 0}, { name: 'inner_prod', n : 0, time: 0}, { name: 'horzcat', n : 104, time: 0.0124391}, { name: 'vertcat', n : 0, time: 0}, { name: 'diagcat', n : 0, time: 0}, { name: 'horzsplit', n : 106, time: 0.0161348}, { name: 'vertsplit', n : 0, time: 0}, { name: 'diagsplit', n : 0, time: 0}, { name: 'reshape', n : 0, time: 0}, { name: 'subref', n : 0, time: 0}, { name: 'subassign', n : 0, time: 0}, { name: 'getnonzeros', n : 0, time: 0}, { name: 'addnonzeros', n : 0, time: 0}, { name: 'setnonzeros', n : 0, time: 0}, { name: 'set_sparse', n : 0, time: 0}, { name: 'assertion', n : 0, time: 0}, { name: 'norm2', n : 0, time: 0}, { name: 'norm1', n : 0, time: 0}, { name: 'norminf', n : 0, time: 0}, { name: 'normf', n : 0, time: 0}, { name: 'erfinv', n : 0, time: 0}, { name: 'printme', n : 0, time: 0}, { name: 'lift', n : 0, time: 0}, ]}},
502919504: {name:"derivative_resf_0_52", type:'SXFunction', stats: {total_time: 2.84208, external_time: 0, overhead_time: 0, count: 1860}},
504265696: {name:"derivative_nullspace_0_52", type:'SXFunction', stats: {total_time: 0.0322821, external_time: 0, overhead_time: 0, count: 620}},
504544336: {name:"derivative_J_0_52", type:'SXFunction', stats: {total_time: 0.00663399, external_time: 0, overhead_time: 0, count: 620}},
540851312: {name:"jac_g", type:'MXFunction', stats: {total_time: 107.16, external_time: 22.8827, overhead_time: 31.8198, count: 31, ops : [{ name: 'assign', n : 0, time: 0}, { name: 'add', n : 186439, time: 1.52429}, { name: 'sub', n : 13199, time: 0.316667}, { name: 'mul', n : 183481, time: 1.56205}, { name: 'div', n : 3153, time: 0.0463048}, { name: 'neg', n : 8419, time: 0.153545}, { name: 'exp', n : 0, time: 0}, { name: 'log', n : 0, time: 0}, { name: 'pow', n : 0, time: 0}, { name: 'constpow', n : 0, time: 0}, { name: 'sqrt', n : 179, time: 0.00157687}, { name: 'sq', n : 44, time: 0.000383948}, { name: 'twice', n : 1902, time: 0.0164826}, { name: 'sin', n : 0, time: 0}, { name: 'cos', n : 0, time: 0}, { name: 'tan', n : 0, time: 0}, { name: 'asin', n : 0, time: 0}, { name: 'acos', n : 0, time: 0}, { name: 'atan', n : 0, time: 0}, { name: 'lt', n : 0, time: 0}, { name: 'le', n : 0, time: 0}, { name: 'eq', n : 0, time: 0}, { name: 'ne', n : 0, time: 0}, { name: 'not', n : 0, time: 0}, { name: 'and', n : 0, time: 0}, { name: 'or', n : 0, time: 0}, { name: 'floor', n : 0, time: 0}, { name: 'ceil', n : 0, time: 0}, { name: 'fmod', n : 0, time: 0}, { name: 'fabs', n : 0, time: 0}, { name: 'sign', n : 0, time: 0}, { name: 'copysign', n : 0, time: 0}, { name: 'if_else_zero', n : 0, time: 0}, { name: 'erf', n : 0, time: 0}, { name: 'fmin', n : 0, time: 0}, { name: 'fmax', n : 0, time: 0}, { name: 'inv', n : 1450, time: 0.0163542}, { name: 'sinh', n : 0, time: 0}, { name: 'cosh', n : 0, time: 0}, { name: 'tanh', n : 0, time: 0}, { name: 'asinh', n : 0, time: 0}, { name: 'acosh', n : 0, time: 0}, { name: 'atanh', n : 0, time: 0}, { name: 'atan2', n : 0, time: 0}, { name: 'const', n : 325884, time: 2.71252}, { name: 'input', n : 2, time: 0.00011753}, { name: 'output', n : 3, time: 0.0229773}, { name: 'parameter', n : 0, time: 0}, { name: 'call', n : 614, time: 22.8827, dependency: 0}, { name: 'matmul', n : 112702, time: 26.4592}, { name: 'solve', n : 302, time: 4.9451}, { name: 'transpose', n : 180854, time: 3.45522}, { name: 'determinant', n : 0, time: 0}, { name: 'inverse', n : 0, time: 0}, { name: 'inner_prod', n : 159003, time: 1.90382}, { name: 'horzcat', n : 11324, time: 0.282977}, { name: 'vertcat', n : 66, time: 0.00248091}, { name: 'diagcat', n : 0, time: 0}, { name: 'horzsplit', n : 26032, time: 0.701827}, { name: 'vertsplit', n : 4754, time: 0.11299}, { name: 'diagsplit', n : 0, time: 0}, { name: 'reshape', n : 3600, time: 0.0404846}, { name: 'subref', n : 0, time: 0}, { name: 'subassign', n : 0, time: 0}, { name: 'getnonzeros', n : 421435, time: 2.48132}, { name: 'addnonzeros', n : 163718, time: 1.20531}, { name: 'setnonzeros', n : 474350, time: 2.98426}, { name: 'set_sparse', n : 34265, time: 1.50954}, { name: 'assertion', n : 0, time: 0}, { name: 'norm2', n : 0, time: 0}, { name: 'norm1', n : 0, time: 0}, { name: 'norminf', n : 0, time: 0}, { name: 'normf', n : 0, time: 0}, { name: 'erfinv', n : 0, time: 0}, { name: 'printme', n : 0, time: 0}, { name: 'lift', n : 0, time: 0}, ]}},
};
var functioncalls=[ {source:63837632, target:54597936,ncalls:60}, {source:63837632, target:58261168,ncalls:20}, {source:63837632, target:58287472,ncalls:20}, {source:64454544, target:54557088,ncalls:608}, {source:64454544, target:54597936,ncalls:1920}, {source:64454544, target:58261168,ncalls:640}, {source:64454544, target:58287472,ncalls:640}, {source:64454544, target:58424640,ncalls:32}, {source:67450656, target:54557088,ncalls:1634}, {source:67450656, target:54597936,ncalls:5160}, {source:67450656, target:58261168,ncalls:1720}, {source:67450656, target:58287472,ncalls:1720}, {source:67450656, target:58424640,ncalls:86}, {source:77833104, target:67450656,ncalls:84}, {source:77833104, target:78019616,ncalls:31}, {source:77833104, target:540851312,ncalls:32}, {source:78019616, target:54557088,ncalls:589}, {source:78019616, target:54597936,ncalls:1860}, {source:78019616, target:58261168,ncalls:620}, {source:78019616, target:58287472,ncalls:620}, {source:78019616, target:58424640,ncalls:31}, {source:204583008, target:58424640,ncalls:31}, {source:204583008, target:198610224,ncalls:31}, {source:238711728, target:58424640,ncalls:31}, {source:238711728, target:227895664,ncalls:31}, {source:350295184, target:58424640,ncalls:31}, {source:350295184, target:334444416,ncalls:31}, {source:476924240, target:58424640,ncalls:31}, {source:476924240, target:466416320,ncalls:31}, {source:540851312, target:54557088,ncalls:589}, {source:540851312, target:54597936,ncalls:1860}, {source:540851312, target:58261168,ncalls:620}, {source:540851312, target:58287472,ncalls:620}, {source:540851312, target:58424640,ncalls:31}, {source:540851312, target:86172000,ncalls:93}, {source:540851312, target:94109184,ncalls:1364}, {source:540851312, target:110189328,ncalls:93}, {source:540851312, target:126340864,ncalls:62}, {source:540851312, target:131879776,ncalls:31}, {source:540851312, target:132486000,ncalls:31}, {source:540851312, target:136540496,ncalls:31}, {source:540851312, target:137812816,ncalls:1798}, {source:540851312, target:142780624,ncalls:31}, {source:540851312, target:145613456,ncalls:62}, {source:540851312, target:152372400,ncalls:31}, {source:540851312, target:158126608,ncalls:62}, {source:540851312, target:161679904,ncalls:62}, {source:540851312, target:161904768,ncalls:62}, {source:540851312, target:163327424,ncalls:62}, {source:540851312, target:171118544,ncalls:62}, {source:540851312, target:177471840,ncalls:62}, {source:540851312, target:190196496,ncalls:589}, {source:540851312, target:204583008,ncalls:31}, {source:540851312, target:208358256,ncalls:62}, {source:540851312, target:208706240,ncalls:620}, {source:540851312, target:208731328,ncalls:589}, {source:540851312, target:216570368,ncalls:31}, {source:540851312, target:238711728,ncalls:31}, {source:540851312, target:266636064,ncalls:1860}, {source:540851312, target:268086944,ncalls:620}, {source:540851312, target:268171776,ncalls:620}, {source:540851312, target:350295184,ncalls:31}, {source:540851312, target:384238224,ncalls:1860}, {source:540851312, target:385915072,ncalls:620}, {source:540851312, target:386023296,ncalls:620}, {source:540851312, target:476924240,ncalls:31}, {source:540851312, target:502919504,ncalls:1860}, {source:540851312, target:504265696,ncalls:620}, {source:540851312, target:504544336,ncalls:620},];
</script>
<script>
// From associative array to flat array
var functions_array = [];
var f_lookup = d3.map();
var i = 0;
d3.entries(functions).forEach(function (e) {
if (e.value.name==='CSparse' || e.value.name==='LapackLUDense') return;
ret = e.value;
ret.originalid = e.key;
functions_array.push(ret);
f_lookup.set(e.key,i);
i = i +1;
});
var functioncalls_new = [];
functioncalls.forEach(function(e) {
if (f_lookup.has(e.source) && f_lookup.has(e.target)) {
e.target = f_lookup.get(e.target);
e.source = f_lookup.get(e.source);
functioncalls_new.push(e);
}
});
functions = functions_array;
functionscalls = functioncalls_new;
// aggregation
function compact(s) {
s = s.replace(/^((\w+\()*)derivative_(.*)_0_\d+(\)*)$/g,"$1adj($3)$4");
s = s.replace(/^((\w+\()*)derivative_(.*)_\d+_0(\)*)$/g,"$1fwd($3)$4");
s = s.replace(/^((\w+\()*)jacobian_(.*)_0_0(\)*)$/g,"$1jac($3)$4");
s = s.replace(/^((\w+\()*)derivative_(.*)_0_\d+(\)*)$/g,"$1adj($3)$4");
s = s.replace(/^((\w+\()*)derivative_(.*)_\d+_0(\)*)$/g,"$1fwd($3)$4");
s = s.replace(/^((\w+\()*)jacobian_(.*)_0_0(\)*)$/g,"$1jac($3)$4");
return s;
}
// aggregation
compact_dic = d3.map();
functions.forEach(function(e,i) {
cname = compact(e.name);
e.name = cname;
if (compact_dic.has(cname)) {
var temp = compact_dic.get(cname)
temp.push(i);
compact_dic.set(cname , temp);
} else {
compact_dic.set(cname , [i]);
}
});
function function_join(a,b) {
if ("stats" in b) {
a.stats.total_time+=b.stats.total_time;
a.stats.overhead_time+=b.stats.overhead_time;
a.stats.external_time+=b.stats.external_time;
a.stats.count+=b.stats.count;
if ("ops" in b.stats) {
b.stats.ops.forEach(function (e,i) {
if (a.stats.ops[i].name!=b.stats.ops[i].name) {
throw "mismatch";
} else {
a.stats.ops[i].time+=b.stats.ops[i].time;
a.stats.ops[i].n+=b.stats.ops[i].n;
}
});
}
}
}
f_lookup = d3.map();
functions_array = [];
compact_dic.entries().forEach(function(e,i) {
var obj = null
e.value.forEach(function (orig) {
if (obj==null) {
obj = functions[orig];
} else {
function_join(obj,functions[orig]);
}
f_lookup.set(orig, i);
});
obj.index = i;
functions_array.push(obj);
});
functioncalls.forEach(function(e) {
if (f_lookup.has(e.source) && f_lookup.has(e.target)) {
e.target = f_lookup.get(e.target);
e.source = f_lookup.get(e.source);
functioncalls_new.push(e);
}
});
functions = functions_array;
functionscalls = functioncalls_new;
scale = 30; // 1 second == scale*scale
var width = 960,
height = 500
var zoom = d3.behavior.zoom()
.on("zoom", zoomed);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
// build the arrow.
svg.append("defs").selectAll("marker")
.data(["end"]) // Different link/path types can be defined here
.enter().append("marker") // This section adds in the arrows
.attr("id", String)
.attr("viewBox", "0 -5 10 10")
.attr("refX", 10)
.attr("refY", 0)
.attr("markerWidth", 6)
.attr("markerHeight", 6)
.attr("orient", "auto")
.append("svg:path")
.attr("d", "M0,-5L10,0L0,5");
svg.append('rect')
.attr('width', width)
.attr('height', height)
.attr('fill', 'white');
var svg = svg.append("g")
.call(zoom)
.append("g");
functions.forEach(function (d) {
d.radius = Math.max(scaled(d.stats.total_time)/Math.sqrt(2),50);
});
var force = d3.layout.force()
.linkDistance(function (d) { return (d.source.radius+d.target.radius) * 1.2; })
//.linkDistance(500)
.charge(function (d) { return -d.radius*d.radius*2; }) //-d.radius*d.radius;
//charge(-200)
.size([width, height]);
function zoomed() {
svg.attr("transform", "translate(" + d3.event.translate + ")scale(" + d3.event.scale + ")");
}
force
.nodes(functions)
.links(functioncalls)
.start();
var link = svg.selectAll(".link")
.data(functioncalls)
.enter().append("path")
.attr("class", "link")
.attr("marker-end", "url(#end)");
var node = svg.selectAll(".node")
.data(functions)
.enter().append("g")
.attr("class", "node")
.classed("MXFunction",function (d) { return d.type==="MXFunction"})
.classed("SXFunction",function (d) { return d.type==="SXFunction"})
.classed("other",function (d) { return d.type==="other"})
.call(force.drag);
node.append("circle")
.attr("class", "node")
.attr("r", function (d) {return d.radius })
node.append("text")
.attr("dy", "-0.35em")
.attr("text-anchor", "middle")
.text(function(d) { return d.name })
.attr('y', function(d) { return -scaled(d.stats.total_time)/2});
//node.append("rect")
// .attr()
force.on("tick", function() {
//var q = d3.geom.quadtree(functions),
//i = 0,
//n = functions.length;
//while (++i < n) {
// q.visit(collide(functions[i]));
//}
link.attr("d", function(d) {
var dx = d.target.x - d.source.x,
dy = d.target.y - d.source.y,
dr = Math.sqrt(dx * dx + dy * dy+1e-6);
dx = dx/dr;
dy = dy/dr;
return "M" +
(d.source.x + dx* (d.source.radius+10)) + "," +
(d.source.y + dy* (d.source.radius+10)) + "L" +
(d.target.x - dx* (d.target.radius+10)) + "," +
(d.target.y - dy* (d.target.radius+10)) ;
});
node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
});
function collide(node) {
var r = node.radius + 16,
nx1 = node.x - r,
nx2 = node.x + r,
ny1 = node.y - r,
ny2 = node.y + r;
return function(quad, x1, y1, x2, y2) {
if (quad.point && (quad.point !== node)) {
var x = node.x - quad.point.x,
y = node.y - quad.point.y,
l = Math.sqrt(x * x + y * y),
r = node.radius + quad.point.radius;
if (l < r) {
l = (l - r) / l * .5;
node.x -= x *= l;
node.y -= y *= l;
quad.point.x += x;
quad.point.y += y;
}
}
return x1 > nx2
|| x2 < nx1
|| y1 > ny2
|| y2 < ny1;
};
}
function scaled(t) {
return scale*Math.sqrt(t);
}
// https://gist.github.com/paulirish/1579816
treemaps = {}
node.each(function (d) {
treemaps[d.originalid] = d3.layout.treemap()
.size([scaled(d.stats.total_time), scaled(d.stats.total_time)])
.sticky(true)
.value(function(d) { return d.time; });
});
function treemap_lookup(d) {
if ('parent' in d) {
return treemaps[d.parent.originalid](d);
} else {
return treemaps[d.originalid](d);
}
}
var cell = node.filter(function(d) { return d.type==="MXFunction"|| d.type==="other";} )
.append("g")
.attr('transform', function(d) { return 'translate(' + (- scaled(d.stats.total_time)/2) + ',' + (- scaled(d.stats.total_time)/2) + ')'; })
.datum(function (d,i) { return { "name": 'all', "children": d.stats.ops.concat([ {name: "overhead", time: d.stats.overhead_time, n: 1, overhead: true} ]), "originalid": d.originalid,"index": d.index}; })
.selectAll(".cell")
.data(treemap_lookup)
.enter().append('g')
.attr('class', 'cell')
.attr('transform', function(d) { return 'translate(' + d.x + ',' + d.y + ')'; });
// add a rectangle to each cell
cell.append('rect')
.attr('width', function(d) { return d.dx; })
.attr('height', function(d) { return d.dy; })
.classed("call",function (d) { return "dependency" in d;})
.classed("overhead",function (d) { return "overhead" in d;})
.append("title")
.text(function(d) { return "parent" in d? "Inside: " + functions[d.parent.index].name + " -- total " + functions[d.parent.index].stats.total_time + "s, " + functions[d.parent.index].stats.count + " calls" + "\n" + d.name + ": " + d.time + "s, " + d.n + " calls" : ""; });
// label the cells
cell.append('text')
.attr('x', function(d) { return d.dx/2; d})
.attr('y', function(d) { return d.dy/2; d})
.attr('dy', '.35em')
.attr('text-anchor', 'middle')
.text(function(d) { return d.area>100.0 ? d.name : "" });
cell = node.filter(function(d) { return d.type==="SXFunction";} )
.append("g")
.attr('transform', function(d) { return 'translate(' + (- scaled(d.stats.total_time)/2) + ',' + (- scaled(d.stats.total_time)/2) + ')'; })
.attr('class', 'cell')
.append('rect')
.attr('width', function(d) { return scaled(d.stats.total_time); })
.attr('height', function(d) { return scaled(d.stats.total_time);})
.style('fill', function(d) { return d.name==="call" ? "white" : (d.name==="overhead" ? "#ff8080": "red"); })
.append("title")
.text(function(d) { return d.name + ": " + d.stats.total_time + "s, " + d.stats.count + " calls"; });
</script>
</body></html>
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