Converts a SMILES string to a 2D picture

smiles2png.py

import sys
sys.path.append("/usr/local/lib/python2.7/site-packages/")
from rdkit import Chem
from rdkit.Chem import AllChem
from rdkit.Chem import Draw
from rdkit.sping import PIL

filename = sys.argv[1]
file = open(filename, "r+")

for line in file:
    words = line.split()
    name = words[0]
    smiles = words[1]
    m = Chem.MolFromSmiles(smiles)
    Draw.MolToFile(m,name+".png")