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Jmol script for the computational chemistry movie
cd /Applications/jmol-11.7.26/models/
background white
frank off
hide all
delay 2
display atomno=8; delay 2
display atomno=8,atomno=4; delay 2
display atomno=8,atomno=4,atomno=2; delay 1
display atomno=8,atomno=4,atomno=2; delay 1
display atomno=8,atomno=4,atomno=2,atomno=1; delay 1
display atomno=8,atomno=4,atomno=2,atomno=1,atomno=13; delay 1
display atomno=8,atomno=4,atomno=2,atomno=1,atomno=13,atomno=10; delay 3
display atomno=8,atomno=4,atomno=2,atomno=1,atomno=13,atomno=10,atomno=12; delay 0.5
display atomno=8,atomno=4,atomno=2,atomno=1,atomno=13,atomno=10,atomno=12,atomno=24; delay 0.5
display atomno=8,atomno=4,atomno=2,atomno=1,atomno=13,atomno=10,atomno=12,atomno=24,atomno=23; delay 0.5
display atomno=8,atomno=4,atomno=2,atomno=1,atomno=13,atomno=10,atomno=12,atomno=24,atomno=23,atomno=25; delay 1
display atomno=8,atomno=4,atomno=2,atomno=1,atomno=13,atomno=10,atomno=12,atomno=24,atomno=23,atomno=25,atomno=15,atomno=16; delay 2
display all;delay 1
spin x 90
delay 4
spin off
#goto _start
isosurface resolution 6 SOLVENT
delay 2
spin y 90
delay 4
spin off
delay 2
isosurface resolution 6 SOLVENT map MEP
delay 5
spin x 90
delay 4
spin off
delay 5
load frame100.log
mo cutoff 0.045
mo fill nomesh
MO titleFormat ""
mo 46
delay 5
mo 47
delay 5
message _start
frame 1.52
vibration 1
vibration scale 1
delay 5
vibration 0.1
vibration scale 1.5
delay 5
load regioDA.xyz
frame play 1.75
animation direction - 1
animation fps 50
animation on
delay 5
animation fps 10
frame playrev
delay 10
frame 1.100 1.59
frame playrev
delay 5
moveto 1.0 { 974 -222 52 42.96} 151.45 0.0 0.0 {-0.15659988 -0.23255014 0.20139992} 5.5505934 {0.0 0.0 0.0} 2.185909 -5.445272 0.0;
measure (c10/59) (c13/59)
spin y
delay 5
spin off
measure off
moveto 10.0 { 656 676 337 24.3} 1588.26 -22.25 22.96 {-0.15659988 -0.23255014 0.20139992} 5.5505934 {0.0 0.0 0.0} -13.455098 -29.810713 0.0;
delay 5
load diffgear.pdb
zoom 5.0
delay 5
moveto 1.0 {0 0 1 0} 50.0 0.0 0.0 {6.0690002 5.762001 -27.2975} 34.414436 {0.0 0.0 0.0} -4.6623707 5.818512 0.0;
delay 2
moveto 1.0 { 1000 27 8 91.02} 50.0 0.0 0.0 {6.0690002 5.762001 -27.2975} 34.414436 {0.0 0.0 0.0} -3.726368 25.769527 0.0;
delay 2
moveto 10.0 { 986 -111 -128 91.98} 692.02 0.0 0.0 {6.0690002 5.762001 -27.2975} 34.414436 {0.0 0.0 0.0} -107.167595 279.06686 0.0;
delay 5
moveto 5.0 { 948 -218 -232 94.33} 10489.06 28.23 -14.78 {6.0690002 5.762001 -27.2975} 34.414436 {0.0 0.0 0.0} -711.6929 1153.7278 0.0;
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