Jon Haitz Legarreta Gorroño jhlegarreta
jhlegarreta
/ fibertractmeasurements_slicerpy_anon.py
Created
July 5, 2023 22:15
Compute tractography measures using Slicer FiberTractMeasurements module
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| # -*- coding: utf-8 -*- | |
| import subprocess | |
| #import slicer | |
| #from slicer.ScriptedLoadableModule import * | |
| def run_command(command, out_path): |
jhlegarreta
/ CMakeLists.txt
Created
December 27, 2022 00:32
Including `itkDCMTKFileReader.h` in a test file produces a compiler error
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| itk_module_test() | |
| set(ITKIODCMTKTests | |
| itkDCMTKGetDicomTagsTest.cxx | |
| itkDCMTKImageIOTest.cxx | |
| itkDCMTKRGBImageIOTest.cxx | |
| itkDCMTKSeriesReadImageWrite.cxx | |
| itkDCMTKSeriesStreamReadImageWrite.cxx | |
| itkDCMTKImageIOOrthoDirTest.cxx | |
| itkDCMTKMultiFrame4DTest.cxx | |
| itkDCMTKLoggerTest.cxx |
jhlegarreta
/ fury_tighten_camera_issue.py
Created
July 26, 2021 20:54
fury camera tighten not working as expected
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| import os | |
| import nibabel as nib | |
| from dipy.data import fetch_bundles_2_subjects, read_bundles_2_subjects | |
| from fury import window, actor | |
| fetch_bundles_2_subjects() | |
| fname_t1 = os.path.join( | |
| os.path.expanduser('~'), '.dipy', 'exp_bundles_and_maps', | |
| 'bundles_2_subjects', 'subj_1', 't1_warped.nii.gz') |
jhlegarreta
/ fury_snapshot_anatomical_orientation.py
Created
July 20, 2021 20:03
fury amatomical orientation scene vs snapshot issue
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| import os | |
| import nibabel as nib | |
| from dipy.data import fetch_bundles_2_subjects, read_bundles_2_subjects | |
| from fury import window, actor | |
| fetch_bundles_2_subjects() | |
| fname_t1 = os.path.join( | |
| os.path.expanduser('~'), '.dipy', 'exp_bundles_and_maps', | |
| 'bundles_2_subjects', 'subj_1', 't1_warped.nii.gz') |
jhlegarreta
/ fury_streamline_vis.py
Created
June 30, 2021 14:50
fury streamline actor partially occluded by volume slice
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| import os | |
| import nibabel as nib | |
| from dipy.data import fetch_bundles_2_subjects, read_bundles_2_subjects | |
| from fury import window, actor | |
| fetch_bundles_2_subjects() | |
| fname_t1 = os.path.join( | |
| os.path.expanduser('~'), '.dipy', 'exp_bundles_and_maps', | |
| 'bundles_2_subjects', 'subj_1', 't1_warped.nii.gz') |
jhlegarreta
/ umap_sparse.py
Created
October 13, 2018 19:08
— forked from johnhw/umap_sparse.py
1 million prime UMAP layout
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| ### JHW 2018 | |
| import numpy as np | |
| import umap | |
| # This code from the excellent module at: | |
| # https://stackoverflow.com/questions/4643647/fast-prime-factorization-module | |
| import random |
jhlegarreta
/ neural-style.py
Created
September 9, 2018 15:55
Pytorch tutorials for Neural Style transfer
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| """ | |
| Pytorch tutorials for Neural Style transfer | |
| https://github.com/alexis-jacq/Pytorch-Tutorials | |
| """ | |
| # Packages | |
| from PIL import Image | |
| import torch | |
| from torch import nn, optim | |
| from torch.autograd import Variable |
jhlegarreta
/ git-log-to-tikz.rb
Created
November 16, 2017 18:23
— forked from lckarssen/git-log-to-tikz.rb
Extract git history to tikz picture
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| #!/usr/bin/env ruby | |
| # A small ruby script to extract a git history to a tikz picture | |
| # Author: Michael Hauspie <Michael.Hauspie@lifl.fr> | |
| # Author: Lennart C. Karssen <lennart@karssen.org> | |
| # | |
| # Not clean code, not always working well, but does its job in most of | |
| # the cases I needed :) | |
| # | |
| # LCK: Added some ideas from this tex.stackexchange answer: |