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GBIF download script - requests archive that includes all of GBIF spatial records without (spatial) issues.
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{ | |
"creator":"jhpoelen", | |
"notification_address": ["jhpoelen+gbif@gmail.com"], | |
"predicate": | |
{ | |
"type":"and", | |
"predicates": [ | |
{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false"}, | |
{"type":"equals","key":"HAS_COORDINATE","value":"true"} | |
] | |
} | |
} |
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# Sample script to request occurrence downloads from GBIF | |
# see http://www.gbif.org/developer/occurrence | |
if [ ! $# -eq 3 ] | |
then | |
echo "usage: gbif_download [username] [password] [filter filename]" | |
exit | |
fi | |
USER=$1 | |
PASSWORD=$2 | |
FILTER_JSON=$3 | |
curl -i --user $USER:$PASSWORD -H "Content-Type: application/json" -H "Accept: application/json" -X POST -d @$FILTER_JSON http://api.gbif.org/v1/occurrence/download/request |
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# Sample script to check the status of occurrence downloads from GBIF | |
# see http://www.gbif.org/developer/occurrence | |
if [ ! $# -eq 2 ] | |
then | |
echo "usage: gbif_download [username] [password]" | |
exit | |
fi | |
USER=$1 | |
PASSWORD=$2 | |
curl -i --user $USER:$PASSWORD -H "Content-Type: application/json" -H "Accept: application/json" http://api.gbif.org/v1/occurrence/download/user/$USER |
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{ | |
"offset": 0, | |
"limit": 20, | |
"endOfRecords": true, | |
"count": 5, | |
"results": [ | |
{ | |
"key": "0000381-150615163101818", | |
"doi": "doi:10.15468/dl.izel5b", | |
"request": { | |
"predicate": { | |
"type": "and", | |
"predicates": [ | |
{ | |
"type": "equals", | |
"key": "HAS_GEOSPATIAL_ISSUE", | |
"value": "false" | |
}, | |
{ | |
"type": "equals", | |
"key": "HAS_COORDINATE", | |
"value": "true" | |
} | |
] | |
}, | |
"creator": "jhpoelen", | |
"format": "DWCA", | |
"notificationAddresses": [ | |
"jhpoelen+gbif@gmail.com" | |
], | |
"sendNotification": false | |
}, | |
"created": "2015-06-16T16:09:01.737+0000", | |
"modified": "2015-06-16T17:56:29.555+0000", | |
"status": "SUCCEEDED", | |
"downloadLink": "http://api.gbif.org/v1/occurrence/download/request/0000381-150615163101818.zip", | |
"size": 76382210827, | |
"totalRecords": 470818956, | |
"numberDatasets": 11758 | |
}, | |
{ | |
"key": "0007639-141024112412452", | |
"request": { | |
"creator": "jhpoelen", | |
"format": "DWCA", | |
"notificationAddresses": [ | |
"jhpoelen@xs4all.nl" | |
], | |
"sendNotification": true | |
}, | |
"created": "2014-11-21T22:56:20.081+0000", | |
"modified": "2014-11-21T22:56:53.419+0000", | |
"status": "CANCELLED", | |
"downloadLink": "http://api.gbif.org/v1/occurrence/download/request/0007639-141024112412452.zip", | |
"size": 0, | |
"totalRecords": 517325594, | |
"numberDatasets": 0 | |
}, | |
{ | |
"key": "0007609-141024112412452", | |
"request": { | |
"creator": "jhpoelen", | |
"format": "DWCA", | |
"notificationAddresses": [ | |
"jhpoelen@xs4all.nl" | |
], | |
"sendNotification": true | |
}, | |
"created": "2014-11-21T21:04:59.352+0000", | |
"modified": "2014-11-21T23:57:34.156+0000", | |
"status": "SUCCEEDED", | |
"downloadLink": "http://api.gbif.org/v1/occurrence/download/request/0007609-141024112412452.zip", | |
"size": 80999381097, | |
"totalRecords": 517325594, | |
"numberDatasets": 12596 | |
}, | |
{ | |
"key": "0001155-140711145354668", | |
"request": { | |
"creator": "jhpoelen", | |
"format": "DWCA", | |
"notificationAddresses": [ | |
"jhpoelen@xs4all.nl" | |
], | |
"sendNotification": false | |
}, | |
"created": "2014-07-19T15:01:35.726+0000", | |
"modified": "2014-07-19T23:11:20.460+0000", | |
"status": "SUCCEEDED", | |
"downloadLink": "http://api.gbif.org/v1/occurrence/download/request/0001155-140711145354668.zip", | |
"size": 41308707727, | |
"totalRecords": 447514771, | |
"numberDatasets": 12449 | |
}, | |
{ | |
"key": "0001094-140711145354668", | |
"request": { | |
"predicate": { | |
"type": "equals", | |
"key": "TAXON_KEY", | |
"value": "2440447" | |
}, | |
"creator": "jhpoelen", | |
"format": "DWCA", | |
"notificationAddresses": [ | |
"jhpoelen@xs4all.nl" | |
], | |
"sendNotification": false | |
}, | |
"created": "2014-07-18T19:56:13.260+0000", | |
"modified": "2014-07-18T19:58:32.312+0000", | |
"status": "SUCCEEDED", | |
"downloadLink": "http://api.gbif.org/v1/occurrence/download/request/0001094-140711145354668.zip", | |
"size": 4769479, | |
"totalRecords": 29505, | |
"numberDatasets": 121 | |
} | |
] | |
} |
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