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Learning!

Josh Cook jhrcook

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Learning!
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View default-typer-command.py
#!/usr/bin/env python3
# How to get Typer to behave like it has a default command.
# source: https://github.com/tiangolo/typer/issues/18#issuecomment-617089716
import typer
app = typer.Typer()
@jhrcook
jhrcook / parsing_ounces.R
Created May 26, 2020
A function for parsing ounces into a numeric value.
View parsing_ounces.R
# Parse a string given in "# #/# oz" into a decimal value.
parse_ounces <- function(val) {
if (val == "For glass") { return(1) }
if (str_detect(val, "or")) {
val <- str_remove(val, "or.+$")
}
val_pieces <- str_remove_all(val, "oz|slices|tsp|dash") %>%
str_trim() %>%
@jhrcook
jhrcook / EXAMPLE_CODE_FOR_BEN.ipynb
Last active Jan 27, 2020
A Jupyter Notbook showing an example for how to bootstrap a confidence interval.
View EXAMPLE_CODE_FOR_BEN.ipynb
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@jhrcook
jhrcook / boxplots_for_B.R
Last active Dec 12, 2019
Pivot a wide data frame and plot with facets.
View boxplots_for_B.R
library(tidyverse)
#### MAKING MOCK DATA ####
# Some parameters for amount of data.
n_metabs <- 5
n_tissues <- 10
tissues <- purrr::map_chr(1:n_tissues, ~ paste0(sample(letters, 3), collapse=""))
# Make a wide table of data, adding on columns per metabolite
View rsync-to-delete.sh
# An empty directory.
mkdir empty-dir
# A directory with files to delete.
mkdir bar
touch bar/someFile.txt
# Delete files in "bar/"
rsync -a --delete empty-dir/ bar/
@jhrcook
jhrcook / integer_breaks_ggplot2.R
Created Nov 9, 2019
This is how to make the x or y axes only show integer values in a programmatic and scalable fashion.
View integer_breaks_ggplot2.R
# A function factory for getting integer y-axis values.
integer_breaks <- function(n = 5, ...) {
fxn <- function(x) {
breaks <- floor(pretty(x, n, ...))
names(breaks) <- attr(breaks, "labels")
breaks
}
return(fxn)
}
View link_to_post_academic-kickstarter.md

Here is how you can link to [a post]({{< ref "/post/some_post.md" >}}) in Academic Kickstarter for Hugo.

@jhrcook
jhrcook / common-github-badges.md
Last active Dec 2, 2021
A list of GitHub badges I usually add to me README files.
View github_corner_header.html
<a href="https://github.com/jhrcook" class="github-corner" aria-label="View source on GitHub"><svg width="80" height="80" viewBox="0 0 250 250" style="fill:#1E80F0; color:#fff; position: absolute; top: 0; border: 0; right: 0;" aria-hidden="true"><path d="M0,0 L115,115 L130,115 L142,142 L250,250 L250,0 Z"></path><path d="M128.3,109.0 C113.8,99.7 119.0,89.6 119.0,89.6 C122.0,82.7 120.5,78.6 120.5,78.6 C119.2,72.0 123.4,76.3 123.4,76.3 C127.3,80.9 125.5,87.3 125.5,87.3 C122.9,97.6 130.6,101.9 134.4,103.2" fill="currentColor" style="transform-origin: 130px 106px;" class="octo-arm"></path><path d="M115.0,115.0 C114.9,115.1 118.7,116.5 119.8,115.4 L133.7,101.6 C136.9,99.2 139.9,98.4 142.2,98.6 C133.8,88.0 127.5,74.4 143.8,58.0 C148.5,53.4 154.0,51.2 159.7,51.0 C160.3,49.4 163.2,43.6 171.4,40.1 C171.4,40.1 176.1,42.5 178.8,56.2 C183.1,58.6 187.2,61.8 190.9,65.4 C194.5,69.0 197.7,73.2 200.1,77.6 C213.8,80.2 216.3,84.9 216.3,84.9 C212.7,93.1 206.9,96.0 205.4,96.6 C205.1,102.4 203.0,107.8 198.3,112.5 C181.9,128.9 168.3
@jhrcook
jhrcook / cat_same_line.R
Created May 5, 2019
Print to the start of the same line in R
View cat_same_line.R
for (letter in letters) {
cat(letter)
# do some work
Sys.sleep(0.1)
cat("\33[2K\r")
}
cat("done\n")