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May 15, 2020 13:16
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R package binary issue
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| FROM rstudio/r-base:3.6.3-bionic | |
| RUN apt-get -qq update && \ | |
| DEBIAN_FRONTEND=noninteractive apt-get install -y software-properties-common && \ | |
| add-apt-repository -y ppa:ubuntugis/ppa | |
| Run apt-get install -y software-properties-common && \ | |
| add-apt-repository -y ppa:ubuntugis/ppa && \ | |
| apt-get update && \ | |
| apt-get install -y libgdal-dev && \ | |
| apt-get install -y gdal-bin && \ | |
| apt-get install -y libgeos-dev && \ | |
| apt-get install -y libproj-dev && \ | |
| apt-get install -y libudunits2-dev && \ | |
| apt-get clean | |
| RUN echo 'options(repos = c(RSPM = "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", CRAN = "https://cloud.r-project.org"), HTTPUserAgent = sprintf("R/%s R (%s)", getRversion(), paste(getRversion(), R.version$platform, R.version$arch, R.version$os)))' >> ~/.Rprofile | |
| RUN R -e 'install.packages("sf")' -e 'library(sf)' |
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| root@8a4b706c47cb:/opt/R/3.6.3/lib/R/library/sf/libs# ldd sf.so | |
| linux-vdso.so.1 (0x00007ffecfb84000) | |
| libproj.so.12 => not found | |
| libgdal.so.20 => /usr/lib/libgdal.so.20 (0x00007f2ccfa42000) | |
| libgeos_c.so.1 => /usr/lib/x86_64-linux-gnu/libgeos_c.so.1 (0x00007f2ccf811000) | |
| libR.so => not found | |
| libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f2ccf488000) | |
| libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f2ccf0ea000) | |
| libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f2cceed2000) | |
| libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f2cceae1000) | |
| libproj.so.13 => /usr/lib/x86_64-linux-gnu/libproj.so.13 (0x00007f2cce86c000) | |
| libpoppler.so.73 => /usr/lib/x86_64-linux-gnu/libpoppler.so.73 (0x00007f2cce3d6000) | |
| libjson-c.so.3 => /lib/x86_64-linux-gnu/libjson-c.so.3 (0x00007f2cce1cb000) | |
| libfreexl.so.1 => /usr/lib/x86_64-linux-gnu/libfreexl.so.1 (0x00007f2ccdfc2000) | |
| libqhull.so.7 => /usr/lib/x86_64-linux-gnu/libqhull.so.7 (0x00007f2ccdd68000) | |
| libwebp.so.6 => /usr/lib/x86_64-linux-gnu/libwebp.so.6 (0x00007f2ccdaff000) | |
| libepsilon.so.1 => /usr/lib/x86_64-linux-gnu/libepsilon.so.1 (0x00007f2ccd8e7000) | |
| libodbc.so.2 => /usr/lib/x86_64-linux-gnu/libodbc.so.2 (0x00007f2ccd67a000) | |
| libodbcinst.so.2 => /usr/lib/x86_64-linux-gnu/libodbcinst.so.2 (0x00007f2ccd465000) | |
| libkmlbase.so.1 => /usr/lib/x86_64-linux-gnu/libkmlbase.so.1 (0x00007f2ccd24a000) | |
| libkmldom.so.1 => /usr/lib/x86_64-linux-gnu/libkmldom.so.1 (0x00007f2cccf93000) | |
| libkmlengine.so.1 => /usr/lib/x86_64-linux-gnu/libkmlengine.so.1 (0x00007f2cccd5b000) | |
| libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f2cccb29000) | |
| libxerces-c-3.2.so => /usr/lib/x86_64-linux-gnu/libxerces-c-3.2.so (0x00007f2ccc5b5000) | |
| libopenjp2.so.7 => /usr/lib/x86_64-linux-gnu/libopenjp2.so.7 (0x00007f2ccc35f000) | |
| libnetcdf.so.13 => /usr/lib/x86_64-linux-gnu/libnetcdf.so.13 (0x00007f2ccc03d000) | |
| libhdf5_serial.so.100 => /usr/lib/x86_64-linux-gnu/libhdf5_serial.so.100 (0x00007f2ccbae5000) | |
| libmfhdfalt.so.0 => /usr/lib/libmfhdfalt.so.0 (0x00007f2ccb8bf000) | |
| libdfalt.so.0 => /usr/lib/libdfalt.so.0 (0x00007f2ccb61c000) | |
| libogdi.so.4.1 => /usr/lib/libogdi.so.4.1 (0x00007f2ccb402000) | |
| libgif.so.7 => /usr/lib/x86_64-linux-gnu/libgif.so.7 (0x00007f2ccb1f9000) | |
| libCharLS.so.1 => /usr/lib/x86_64-linux-gnu/libCharLS.so.1 (0x00007f2ccafb2000) | |
| libjpeg.so.8 => /usr/lib/x86_64-linux-gnu/libjpeg.so.8 (0x00007f2ccad4a000) | |
| libgeotiff.so.2 => /usr/lib/x86_64-linux-gnu/libgeotiff.so.2 (0x00007f2ccab14000) | |
| libtiff.so.5 => /usr/lib/x86_64-linux-gnu/libtiff.so.5 (0x00007f2cca89d000) | |
| libpng16.so.16 => /usr/lib/x86_64-linux-gnu/libpng16.so.16 (0x00007f2cca66b000) | |
| libpq.so.5 => /usr/lib/x86_64-linux-gnu/libpq.so.5 (0x00007f2cca422000) | |
| libdapclient.so.6 => /usr/lib/x86_64-linux-gnu/libdapclient.so.6 (0x00007f2cca1e1000) | |
| libdap.so.25 => /usr/lib/x86_64-linux-gnu/libdap.so.25 (0x00007f2cc9e51000) | |
| libspatialite.so.7 => /usr/lib/x86_64-linux-gnu/libspatialite.so.7 (0x00007f2cc96d6000) | |
| libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3 (0x00007f2cc9464000) | |
| libcurl-gnutls.so.4 => /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4 (0x00007f2cc91e7000) | |
| libfyba.so.0 => /usr/lib/x86_64-linux-gnu/libfyba.so.0 (0x00007f2cc8f92000) | |
| libxml2.so.2 => /usr/lib/x86_64-linux-gnu/libxml2.so.2 (0x00007f2cc8bd1000) | |
| libmysqlclient.so.20 => /usr/lib/x86_64-linux-gnu/libmysqlclient.so.20 (0x00007f2cc8619000) | |
| libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f2cc83fa000) | |
| libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f2cc81dd000) | |
| libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f2cc7fd9000) | |
| /lib64/ld-linux-x86-64.so.2 (0x00007f2cd1146000) | |
| libgeos-3.7.1.so => /usr/lib/x86_64-linux-gnu/libgeos-3.7.1.so (0x00007f2cc7c36000) | |
| libfreetype.so.6 => /usr/lib/x86_64-linux-gnu/libfreetype.so.6 (0x00007f2cc7982000) | |
| libfontconfig.so.1 => /usr/lib/x86_64-linux-gnu/libfontconfig.so.1 (0x00007f2cc773d000) | |
| libnss3.so => /usr/lib/x86_64-linux-gnu/libnss3.so (0x00007f2cc73f9000) | |
| libsmime3.so => /usr/lib/x86_64-linux-gnu/libsmime3.so (0x00007f2cc71cd000) | |
| libnspr4.so => /usr/lib/x86_64-linux-gnu/libnspr4.so (0x00007f2cc6f90000) | |
| liblcms2.so.2 => /usr/lib/x86_64-linux-gnu/liblcms2.so.2 (0x00007f2cc6d38000) | |
| libltdl.so.7 => /usr/lib/x86_64-linux-gnu/libltdl.so.7 (0x00007f2cc6b2e000) | |
| libminizip.so.1 => /usr/lib/x86_64-linux-gnu/libminizip.so.1 (0x00007f2cc6923000) | |
| liburiparser.so.1 => /usr/lib/x86_64-linux-gnu/liburiparser.so.1 (0x00007f2cc6708000) | |
| libicuuc.so.60 => /usr/lib/x86_64-linux-gnu/libicuuc.so.60 (0x00007f2cc6350000) | |
| libhdf5_serial_hl.so.100 => /usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.100 (0x00007f2cc612d000) | |
| libsz.so.2 => /usr/lib/x86_64-linux-gnu/libsz.so.2 (0x00007f2cc5f2a000) | |
| liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007f2cc5d04000) | |
| libjbig.so.0 => /usr/lib/x86_64-linux-gnu/libjbig.so.0 (0x00007f2cc5af6000) | |
| libssl.so.1.1 => /usr/lib/x86_64-linux-gnu/libssl.so.1.1 (0x00007f2cc5869000) | |
| libcrypto.so.1.1 => /usr/lib/x86_64-linux-gnu/libcrypto.so.1.1 (0x00007f2cc539e000) | |
| libgssapi_krb5.so.2 => /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2 (0x00007f2cc5153000) | |
| libldap_r-2.4.so.2 => /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2 (0x00007f2cc4f01000) | |
| libsqlite3.so.0 => /usr/lib/x86_64-linux-gnu/libsqlite3.so.0 (0x00007f2cc4bf8000) | |
| libnghttp2.so.14 => /usr/lib/x86_64-linux-gnu/libnghttp2.so.14 (0x00007f2cc49d3000) | |
| libidn2.so.0 => /usr/lib/x86_64-linux-gnu/libidn2.so.0 (0x00007f2cc47b6000) | |
| librtmp.so.1 => /usr/lib/x86_64-linux-gnu/librtmp.so.1 (0x00007f2cc459a000) | |
| libpsl.so.5 => /usr/lib/x86_64-linux-gnu/libpsl.so.5 (0x00007f2cc438c000) | |
| libnettle.so.6 => /usr/lib/x86_64-linux-gnu/libnettle.so.6 (0x00007f2cc4156000) | |
| libgnutls.so.30 => /usr/lib/x86_64-linux-gnu/libgnutls.so.30 (0x00007f2cc3df0000) | |
| liblber-2.4.so.2 => /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2 (0x00007f2cc3be2000) | |
| libfyut.so.0 => /usr/lib/x86_64-linux-gnu/libfyut.so.0 (0x00007f2cc39d9000) | |
| libfygm.so.0 => /usr/lib/x86_64-linux-gnu/libfygm.so.0 (0x00007f2cc37d2000) | |
| libnssutil3.so => /usr/lib/x86_64-linux-gnu/libnssutil3.so (0x00007f2cc35a3000) | |
| libplc4.so => /usr/lib/x86_64-linux-gnu/libplc4.so (0x00007f2cc339e000) | |
| libplds4.so => /usr/lib/x86_64-linux-gnu/libplds4.so (0x00007f2cc319a000) | |
| librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f2cc2f92000) | |
| libicudata.so.60 => /usr/lib/x86_64-linux-gnu/libicudata.so.60 (0x00007f2cc13e9000) | |
| libaec.so.0 => /usr/lib/x86_64-linux-gnu/libaec.so.0 (0x00007f2cc11e1000) | |
| libkrb5.so.3 => /usr/lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007f2cc0f0b000) | |
| libk5crypto.so.3 => /usr/lib/x86_64-linux-gnu/libk5crypto.so.3 (0x00007f2cc0cd9000) | |
| libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007f2cc0ad5000) | |
| libkrb5support.so.0 => /usr/lib/x86_64-linux-gnu/libkrb5support.so.0 (0x00007f2cc08ca000) | |
| libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007f2cc06af000) | |
| libsasl2.so.2 => /usr/lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007f2cc0494000) | |
| libgssapi.so.3 => /usr/lib/x86_64-linux-gnu/libgssapi.so.3 (0x00007f2cc0253000) | |
| libunistring.so.2 => /usr/lib/x86_64-linux-gnu/libunistring.so.2 (0x00007f2cbfed5000) | |
| libhogweed.so.4 => /usr/lib/x86_64-linux-gnu/libhogweed.so.4 (0x00007f2cbfca1000) | |
| libgmp.so.10 => /usr/lib/x86_64-linux-gnu/libgmp.so.10 (0x00007f2cbfa20000) | |
| libp11-kit.so.0 => /usr/lib/x86_64-linux-gnu/libp11-kit.so.0 (0x00007f2cbf6f1000) | |
| libtasn1.so.6 => /usr/lib/x86_64-linux-gnu/libtasn1.so.6 (0x00007f2cbf4de000) | |
| libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007f2cbf2da000) | |
| libheimntlm.so.0 => /usr/lib/x86_64-linux-gnu/libheimntlm.so.0 (0x00007f2cbf0d1000) | |
| libkrb5.so.26 => /usr/lib/x86_64-linux-gnu/libkrb5.so.26 (0x00007f2cbee44000) | |
| libasn1.so.8 => /usr/lib/x86_64-linux-gnu/libasn1.so.8 (0x00007f2cbeba2000) | |
| libhcrypto.so.4 => /usr/lib/x86_64-linux-gnu/libhcrypto.so.4 (0x00007f2cbe96c000) | |
| libroken.so.18 => /usr/lib/x86_64-linux-gnu/libroken.so.18 (0x00007f2cbe756000) | |
| libffi.so.6 => /usr/lib/x86_64-linux-gnu/libffi.so.6 (0x00007f2cbe54e000) | |
| libwind.so.0 => /usr/lib/x86_64-linux-gnu/libwind.so.0 (0x00007f2cbe325000) | |
| libheimbase.so.1 => /usr/lib/x86_64-linux-gnu/libheimbase.so.1 (0x00007f2cbe116000) | |
| libhx509.so.5 => /usr/lib/x86_64-linux-gnu/libhx509.so.5 (0x00007f2cbdecc000) | |
| libcrypt.so.1 => /lib/x86_64-linux-gnu/libcrypt.so.1 (0x00007f2cbdc94000) |
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| root@8a4b706c47cb:/opt/R/3.6.3/lib/R/library/sf/libs# ls -l /usr/lib/x86_64-linux-gnu/libproj* | |
| -rw-r--r-- 1 root root 1117622 Nov 16 2018 /usr/lib/x86_64-linux-gnu/libproj.a | |
| -rw-r--r-- 1 root root 946 Nov 16 2018 /usr/lib/x86_64-linux-gnu/libproj.la | |
| lrwxrwxrwx 1 root root 17 Nov 16 2018 /usr/lib/x86_64-linux-gnu/libproj.so -> libproj.so.13.1.1 | |
| lrwxrwxrwx 1 root root 17 Nov 16 2018 /usr/lib/x86_64-linux-gnu/libproj.so.13 -> libproj.so.13.1.1 | |
| -rw-r--r-- 1 root root 477512 Nov 16 2018 /usr/lib/x86_64-linux-gnu/libproj.so.13.1.1 |
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