Skip to content

Instantly share code, notes, and snippets.

View jinn0208's full-sized avatar
๐ŸŽฏ
Focusing

Jin Roh jinn0208

๐ŸŽฏ
Focusing
View GitHub Profile
@jinn0208
jinn0208 / QuPath-Concatenate channels.groovy
Created January 26, 2021 04:30 — forked from petebankhead/QuPath-Concatenate channels.groovy
Merge images along the channels dimension in QuPath v0.2.0
/**
* Merge images along the channels dimension in QuPath v0.2.0.
*
* This shows how multiple images can be combined by channel concatenation,
* optionally applying color deconvolution or affine transformations along the way.
* It may be applied to either brightfield images (with stains set) or fluorescence images.
*
* The result can be written to a file (if 'pathOutput' is defined) or opened in the QuPath viewer.
*
* Writing to a file is *strongly recommended* to ensure the result is preserved.
@jinn0208
jinn0208 / QuPath-Transform and transform objects.groovy
Created January 25, 2021 12:38 — forked from petebankhead/QuPath-Transform and transform objects.groovy
Script to transfer QuPath objects from one image to another, applying an AffineTransform to any ROIs
/**
* Script to transfer QuPath objects from one image to another, applying an AffineTransform to any ROIs.
*
* This is a based upon the script I posted on the epic forum thread https://forum.image.sc/t/interactive-image-alignment/23745/9?u=petebankhead
* It has been updated for QuPath v0.2.0 (and made quite a lot shorter along the way).
*
* @author Pete Bankhead
*/
// SET ME! Define transformation matrix
@jinn0208
jinn0208 / gist:6d2b59788e7ed364ce9c50aa398aabce
Created December 11, 2019 10:46 — forked from ihoneymon/how-to-write-by-markdown.md
๋งˆํฌ๋‹ค์šด ์‚ฌ์šฉ๋ฒ•

[๊ณตํ†ต] ๋งˆํฌ๋‹ค์šด markdown ์ž‘์„ฑ๋ฒ•

1. ๋งˆํฌ๋‹ค์šด์— ๊ด€ํ•˜์—ฌ

1.1. ๋งˆํฌ๋‹ค์šด์ด๋ž€?

Markdown์€ ํ…์ŠคํŠธ ๊ธฐ๋ฐ˜์˜ ๋งˆํฌ์—…์–ธ์–ด๋กœ 2004๋…„ ์กด๊ทธ๋ฃจ๋ฒ„์— ์˜ํ•ด ๋งŒ๋“ค์–ด์กŒ์œผ๋ฉฐ ์‰ฝ๊ฒŒ ์“ฐ๊ณ  ์ฝ์„ ์ˆ˜ ์žˆ์œผ๋ฉฐ HTML๋กœ ๋ณ€ํ™˜์ด ๊ฐ€๋Šฅํ•˜๋‹ค. ํŠน์ˆ˜๊ธฐํ˜ธ์™€ ๋ฌธ์ž๋ฅผ ์ด์šฉํ•œ ๋งค์šฐ ๊ฐ„๋‹จํ•œ ๊ตฌ์กฐ์˜ ๋ฌธ๋ฒ•์„ ์‚ฌ์šฉํ•˜์—ฌ ์›น์—์„œ๋„ ๋ณด๋‹ค ๋น ๋ฅด๊ฒŒ ์ปจํ…์ธ ๋ฅผ ์ž‘์„ฑํ•˜๊ณ  ๋ณด๋‹ค ์ง๊ด€์ ์œผ๋กœ ์ธ์‹ํ•  ์ˆ˜ ์žˆ๋‹ค. ๋งˆํฌ๋‹ค์šด์ด ์ตœ๊ทผ ๊ฐ๊ด‘๋ฐ›๊ธฐ ์‹œ์ž‘ํ•œ ์ด์œ ๋Š” ๊นƒํ—™(https://github.com) ๋•๋ถ„์ด๋‹ค. ๊นƒํ—™์˜ ์ €์žฅ์†ŒRepository์— ๊ด€ํ•œ ์ •๋ณด๋ฅผ ๊ธฐ๋กํ•˜๋Š” README.md๋Š” ๊นƒํ—™์„ ์‚ฌ์šฉํ•˜๋Š” ์‚ฌ๋žŒ์ด๋ผ๋ฉด ๋ˆ„๊ตฌ๋‚˜ ๊ฐ€์žฅ ๋จผ์ € ์ ‘ํ•˜๊ฒŒ ๋˜๋Š” ๋งˆํฌ๋‹ค์šด ๋ฌธ์„œ์˜€๋‹ค. ๋งˆํฌ๋‹ค์šด์„ ํ†ตํ•ด์„œ ์„ค์น˜๋ฐฉ๋ฒ•, ์†Œ์Šค์ฝ”๋“œ ์„ค๋ช…, ์ด์Šˆ ๋“ฑ์„ ๊ฐ„๋‹จํ•˜๊ฒŒ ๊ธฐ๋กํ•˜๊ณ  ๊ฐ€๋…์„ฑ์„ ๋†’์ผ ์ˆ˜ ์žˆ๋‹ค๋Š” ๊ฐ•์ ์ด ๋ถ€๊ฐ๋˜๋ฉด์„œ ์ ์  ์—ฌ๋Ÿฌ ๊ณณ์œผ๋กœ ํผ์ ธ๊ฐ€๊ฒŒ ๋œ๋‹ค.

1.2. ๋งˆํฌ๋‹ค์šด์˜ ์žฅ-๋‹จ์ 

1.2.1. ์žฅ์ 