Skip to content

Instantly share code, notes, and snippets.

@jjerphan

jjerphan/trace.log

Created July 29, 2020 11:14
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save jjerphan/efa46c32548cb6e58910052647baf662 to your computer and use it in GitHub Desktop.
Save jjerphan/efa46c32548cb6e58910052647baf662 to your computer and use it in GitHub Desktop.
Download ZIP
Trace describing ilastik#2169 — Problem when saving ("Object dtype dtype('O') has no native HDF5 equivalent") — Ilastik 1.3.3post3
Raw
trace.log
ERROR 2020-07-29 11:54:39,805 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 OpExportSlot.Input []: {_ready : True, NOTREADY : None, shape : (511, 512, 512, 3), axistags : z y x c, original_axistags : z y x c, dtype : <class 'numpy.float32'>, drange : (0.0, 1.0), has_mask : None, _dirty : False, ideal_blockshape : [0, 0, 0, 3], display_mode : 'grayscale', channel_names : ['Gaussian Smoothing (σ=0.3) [0]', 'Gaussian Smoothing (σ=0.3) [1]', 'Gaussian Smoothing (σ=0.3) [2]', 'Gaussian Smoothing (σ=0.3) [3]', 'Gaussian Smoothing (σ=0.7) [0]', 'Gaussian Smoothing (σ=0.7) [1]', 'Gaussian Smoothing (σ=0.7) [2]', 'Gaussian Smoothing (σ=0.7) [3]', 'Gaussian Smoothing (σ=1.0) [0]', 'Gaussian Smoothing (σ=1.0) [1]', 'Gaussian Smoothing (σ=1.0) [2]', 'Gaussian Smoothing (σ=1.0) [3]', 'Gaussian Smoothing (σ=1.6) [0]', 'Gaussian Smoothing (σ=1.6) [1]', 'Gaussian Smoothing (σ=1.6) [2]', 'Gaussian Smoothing (σ=1.6) [3]', 'Gaussian Smoothing (σ=3.5) [0]', 'Gaussian Smoothing (σ=3.5) [1]', 'Gaussian Smoothing (σ=3.5) [2]', 'Gaussian Smoothing (σ=3.5) [3]', 'Gaussian Smoothing (σ=5.0) [0]', 'Gaussian Smoothing (σ=5.0) [1]', 'Gaussian Smoothing (σ=5.0) [2]', 'Gaussian Smoothing (σ=5.0) [3]', 'Gaussian Smoothing (σ=10.0) [0]', 'Gaussian Smoothing (σ=10.0) [1]', 'Gaussian Smoothing (σ=10.0) [2]', 'Gaussian Smoothing (σ=10.0) [3]', 'Laplacian of Gaussian (σ=0.7) [0]', 'Laplacian of Gaussian (σ=0.7) [1]', 'Laplacian of Gaussian (σ=0.7) [2]', 'Laplacian of Gaussian (σ=0.7) [3]', 'Laplacian of Gaussian (σ=1.0) [0]', 'Laplacian of Gaussian (σ=1.0) [1]', 'Laplacian of Gaussian (σ=1.0) [2]', 'Laplacian of Gaussian (σ=1.0) [3]', 'Laplacian of Gaussian (σ=1.6) [0]', 'Laplacian of Gaussian (σ=1.6) [1]', 'Laplacian of Gaussian (σ=1.6) [2]', 'Laplacian of Gaussian (σ=1.6) [3]', 'Laplacian of Gaussian (σ=3.5) [0]', 'Laplacian of Gaussian (σ=3.5) [1]', 'Laplacian of Gaussian (σ=3.5) [2]', 'Laplacian of Gaussian (σ=3.5) [3]', 'Laplacian of Gaussian (σ=5.0) [0]', 'Laplacian of Gaussian (σ=5.0) [1]', 'Laplacian of Gaussian (σ=5.0) [2]', 'Laplacian of Gaussian (σ=5.0) [3]', 'Laplacian of Gaussian (σ=10.0) [0]', 'Laplacian of Gaussian (σ=10.0) [1]', 'Laplacian of Gaussian (σ=10.0) [2]', 'Laplacian of Gaussian (σ=10.0) [3]', 'Gaussian Gradient Magnitude (σ=0.7) [0]', 'Gaussian Gradient Magnitude (σ=0.7) [1]', 'Gaussian Gradient Magnitude (σ=0.7) [2]', 'Gaussian Gradient Magnitude (σ=0.7) [3]', 'Gaussian Gradient Magnitude (σ=1.0) [0]', 'Gaussian Gradient Magnitude (σ=1.0) [1]', 'Gaussian Gradient Magnitude (σ=1.0) [2]', 'Gaussian Gradient Magnitude (σ=1.0) [3]', 'Gaussian Gradient Magnitude (σ=1.6) [0]', 'Gaussian Gradient Magnitude (σ=1.6) [1]', 'Gaussian Gradient Magnitude (σ=1.6) [2]', 'Gaussian Gradient Magnitude (σ=1.6) [3]', 'Gaussian Gradient Magnitude (σ=3.5) [0]', 'Gaussian Gradient Magnitude (σ=3.5) [1]', 'Gaussian Gradient Magnitude (σ=3.5) [2]', 'Gaussian Gradient Magnitude (σ=3.5) [3]', 'Gaussian Gradient Magnitude (σ=5.0) [0]', 'Gaussian Gradient Magnitude (σ=5.0) [1]', 'Gaussian Gradient Magnitude (σ=5.0) [2]', 'Gaussian Gradient Magnitude (σ=5.0) [3]', 'Gaussian Gradient Magnitude (σ=10.0) [0]', 'Gaussian Gradient Magnitude (σ=10.0) [1]', 'Gaussian Gradient Magnitude (σ=10.0) [2]', 'Gaussian Gradient Magnitude (σ=10.0) [3]', 'Difference of Gaussians (σ=0.7) [0]', 'Difference of Gaussians (σ=0.7) [1]', 'Difference of Gaussians (σ=0.7) [2]', 'Difference of Gaussians (σ=0.7) [3]', 'Difference of Gaussians (σ=1.0) [0]', 'Difference of Gaussians (σ=1.0) [1]', 'Difference of Gaussians (σ=1.0) [2]', 'Difference of Gaussians (σ=1.0) [3]', 'Difference of Gaussians (σ=1.6) [0]', 'Difference of Gaussians (σ=1.6) [1]', 'Difference of Gaussians (σ=1.6) [2]', 'Difference of Gaussians (σ=1.6) [3]', 'Difference of Gaussians (σ=3.5) [0]', 'Difference of Gaussians (σ=3.5) [1]', 'Difference of Gaussians (σ=3.5) [2]', 'Difference of Gaussians (σ=3.5) [3]', 'Difference of Gaussians (σ=5.0) [0]', 'Difference of Gaussians (σ=5.0) [1]', 'Difference of Gaussians (σ=5.0) [2]', 'Difference of Gaussians (σ=5.0) [3]', 'Difference of Gaussians (σ=10.0) [0]', 'Difference of Gaussians (σ=10.0) [1]', 'Difference of Gaussians (σ=10.0) [2]', 'Difference of Gaussians (σ=10.0) [3]', 'Structure Tensor Eigenvalues (σ=0.7) [0]', 'Structure Tensor Eigenvalues (σ=0.7) [1]', 'Structure Tensor Eigenvalues (σ=0.7) [2]', 'Structure Tensor Eigenvalues (σ=0.7) [3]', 'Structure Tensor Eigenvalues (σ=0.7) [4]', 'Structure Tensor Eigenvalues (σ=0.7) [5]', 'Structure Tensor Eigenvalues (σ=0.7) [6]', 'Structure Tensor Eigenvalues (σ=0.7) [7]', 'Structure Tensor Eigenvalues (σ=0.7) [8]', 'Structure Tensor Eigenvalues (σ=0.7) [9]', 'Structure Tensor Eigenvalues (σ=0.7) [10]', 'Structure Tensor Eigenvalues (σ=0.7) [11]', 'Structure Tensor Eigenvalues (σ=1.0) [0]', 'Structure Tensor Eigenvalues (σ=1.0) [1]', 'Structure Tensor Eigenvalues (σ=1.0) [2]', 'Structure Tensor Eigenvalues (σ=1.0) [3]', 'Structure Tensor Eigenvalues (σ=1.0) [4]', 'Structure Tensor Eigenvalues (σ=1.0) [5]', 'Structure Tensor Eigenvalues (σ=1.0) [6]', 'Structure Tensor Eigenvalues (σ=1.0) [7]', 'Structure Tensor Eigenvalues (σ=1.0) [8]', 'Structure Tensor Eigenvalues (σ=1.0) [9]', 'Structure Tensor Eigenvalues (σ=1.0) [10]', 'Structure Tensor Eigenvalues (σ=1.0) [11]', 'Structure Tensor Eigenvalues (σ=1.6) [0]', 'Structure Tensor Eigenvalues (σ=1.6) [1]', 'Structure Tensor Eigenvalues (σ=1.6) [2]', 'Structure Tensor Eigenvalues (σ=1.6) [3]', 'Structure Tensor Eigenvalues (σ=1.6) [4]', 'Structure Tensor Eigenvalues (σ=1.6) [5]', 'Structure Tensor Eigenvalues (σ=1.6) [6]', 'Structure Tensor Eigenvalues (σ=1.6) [7]', 'Structure Tensor Eigenvalues (σ=1.6) [8]', 'Structure Tensor Eigenvalues (σ=1.6) [9]', 'Structure Tensor Eigenvalues (σ=1.6) [10]', 'Structure Tensor Eigenvalues (σ=1.6) [11]', 'Structure Tensor Eigenvalues (σ=3.5) [0]', 'Structure Tensor Eigenvalues (σ=3.5) [1]', 'Structure Tensor Eigenvalues (σ=3.5) [2]', 'Structure Tensor Eigenvalues (σ=3.5) [3]', 'Structure Tensor Eigenvalues (σ=3.5) [4]', 'Structure Tensor Eigenvalues (σ=3.5) [5]', 'Structure Tensor Eigenvalues (σ=3.5) [6]', 'Structure Tensor Eigenvalues (σ=3.5) [7]', 'Structure Tensor Eigenvalues (σ=3.5) [8]', 'Structure Tensor Eigenvalues (σ=3.5) [9]', 'Structure Tensor Eigenvalues (σ=3.5) [10]', 'Structure Tensor Eigenvalues (σ=3.5) [11]', 'Structure Tensor Eigenvalues (σ=5.0) [0]', 'Structure Tensor Eigenvalues (σ=5.0) [1]', 'Structure Tensor Eigenvalues (σ=5.0) [2]', 'Structure Tensor Eigenvalues (σ=5.0) [3]', 'Structure Tensor Eigenvalues (σ=5.0) [4]', 'Structure Tensor Eigenvalues (σ=5.0) [5]', 'Structure Tensor Eigenvalues (σ=5.0) [6]', 'Structure Tensor Eigenvalues (σ=5.0) [7]', 'Structure Tensor Eigenvalues (σ=5.0) [8]', 'Structure Tensor Eigenvalues (σ=5.0) [9]', 'Structure Tensor Eigenvalues (σ=5.0) [10]', 'Structure Tensor Eigenvalues (σ=5.0) [11]', 'Structure Tensor Eigenvalues (σ=10.0) [0]', 'Structure Tensor Eigenvalues (σ=10.0) [1]', 'Structure Tensor Eigenvalues (σ=10.0) [2]', 'Structure Tensor Eigenvalues (σ=10.0) [3]', 'Structure Tensor Eigenvalues (σ=10.0) [4]', 'Structure Tensor Eigenvalues (σ=10.0) [5]', 'Structure Tensor Eigenvalues (σ=10.0) [6]', 'Structure Tensor Eigenvalues (σ=10.0) [7]', 'Structure Tensor Eigenvalues (σ=10.0) [8]', 'Structure Tensor Eigenvalues (σ=10.0) [9]', 'Structure Tensor Eigenvalues (σ=10.0) [10]', 'Structure Tensor Eigenvalues (σ=10.0) [11]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [0]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [1]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [2]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [3]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [4]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [5]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [6]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [7]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [8]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [9]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [10]', 'Hessian of Gaussian Eigenvalues (σ=0.7) [11]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [0]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [1]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [2]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [3]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [4]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [5]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [6]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [7]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [8]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [9]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [10]', 'Hessian of Gaussian Eigenvalues (σ=1.0) [11]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [0]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [1]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [2]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [3]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [4]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [5]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [6]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [7]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [8]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [9]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [10]', 'Hessian of Gaussian Eigenvalues (σ=1.6) [11]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [0]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [1]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [2]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [3]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [4]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [5]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [6]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [7]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [8]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [9]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [10]', 'Hessian of Gaussian Eigenvalues (σ=3.5) [11]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [0]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [1]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [2]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [3]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [4]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [5]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [6]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [7]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [8]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [9]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [10]', 'Hessian of Gaussian Eigenvalues (σ=5.0) [11]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [0]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [1]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [2]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [3]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [4]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [5]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [6]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [7]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [8]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [9]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [10]', 'Hessian of Gaussian Eigenvalues (σ=10.0) [11]'], normalizeDisplay : False, max_blockshape : None, original_shape : (511, 512, 512, 1), ram_usage_per_requested_pixel : 1072}
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,806 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 Number of Downstream_slots: 1
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 OpFormattedDataExport.ExportPath []: {_ready : True, NOTREADY : None, shape : (1,), dtype : <class 'object'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 Number of Downstream_slots: 1
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 OpPixelClassificationDataExport.ExportPath []: {_ready : True, NOTREADY : None, shape : (1,), dtype : <class 'object'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 Number of Downstream_slots: 1
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 Wrapped OpPixelClassificationDataExport.ExportPath [index=(1,)]: {_ready : True, NOTREADY : None, shape : (1,), dtype : <class 'object'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,807 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 Number of Downstream_slots: 3
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 OpPixelClassificationDataExport.TransactionSlot []: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 Number of Downstream_slots: 2
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 OpFormattedDataExport.TransactionSlot []: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 OpFormattedDataExport.TransactionSlot []: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 OpPixelClassificationDataExport.TransactionSlot []: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 Number of Downstream_slots: 2
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 OpFormattedDataExport.TransactionSlot []: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,808 slot 7664 139953135314752 OpFormattedDataExport.TransactionSlot []: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 OpWrapSlot.Input []: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 Number of Downstream_slots: 1
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 OpWrapSlot.Output [index=(0,)]: {_ready : True, shape : (1,), dtype : <class 'bool'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,809 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,810 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,811 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,812 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,813 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,813 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,813 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,813 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,813 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,813 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,814 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,815 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,816 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,816 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:39,816 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:39,816 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:39,816 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:40,020 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:40,020 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:40,020 slot 7664 139953135314752 Number of Downstream_slots: 1
ERROR 2020-07-29 11:54:40,020 slot 7664 139953135314752 OpFormattedDataExport.FormatSelectionErrorMsg []: {_ready : True, NOTREADY : None, shape : (1,), dtype : <class 'object'>, has_mask : None, _dirty : False}
ERROR 2020-07-29 11:54:40,020 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:40,020 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:40,021 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:54:40,021 slot 7664 139953135314752 setDirty called
ERROR 2020-07-29 11:54:40,021 slot 7664 139953135314752 self.stype.isConfigured
ERROR 2020-07-29 11:54:40,021 slot 7664 139953135314752 Number of Downstream_slots: 0
ERROR 2020-07-29 11:55:05,819 log_exception 7664 139949744846592 Traceback (most recent call last):
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/ilastik-meta/ilastik/ilastik/applets/base/appletSerializer.py", line 241, in _serialize
self._saveValue(group, name, slot.value)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/ilastik-meta/ilastik/ilastik/applets/base/appletSerializer.py", line 371, in _saveValue
sg = group.create_dataset(name, data=data)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/lib/python3.7/site-packages/h5py/_hl/group.py", line 136, in create_dataset
dsid = dataset.make_new_dset(self, shape, dtype, data, **kwds)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/lib/python3.7/site-packages/h5py/_hl/dataset.py", line 118, in make_new_dset
tid = h5t.py_create(dtype, logical=1)
File "h5py/h5t.pyx", line 1630, in h5py.h5t.py_create
File "h5py/h5t.pyx", line 1652, in h5py.h5t.py_create
File "h5py/h5t.pyx", line 1707, in h5py.h5t.py_create
TypeError: Object dtype dtype('O') has no native HDF5 equivalent
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/ilastik-meta/ilastik/ilastik/shell/projectManager.py", line 293, in saveProject
serializer.serializeToHdf5(self.currentProjectFile, self.currentProjectPath)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/ilastik-meta/ilastik/ilastik/applets/base/appletSerializer.py", line 1110, in serializeToHdf5
ss.serialize(topGroup)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/ilastik-meta/ilastik/ilastik/applets/base/appletSerializer.py", line 213, in serialize
self._serialize(group, self.name, self.slot)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/ilastik-meta/ilastik/ilastik/applets/base/appletSerializer.py", line 243, in _serialize
self._saveValue(group, name, slot(()).wait())
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/ilastik-meta/ilastik/ilastik/applets/base/appletSerializer.py", line 371, in _saveValue
sg = group.create_dataset(name, data=data)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/lib/python3.7/site-packages/h5py/_hl/group.py", line 136, in create_dataset
dsid = dataset.make_new_dset(self, shape, dtype, data, **kwds)
File "/home/jerphanion/.local/share/ilastik-1.3.3post3-Linux/lib/python3.7/site-packages/h5py/_hl/dataset.py", line 118, in make_new_dset
tid = h5t.py_create(dtype, logical=1)
File "h5py/h5t.pyx", line 1630, in h5py.h5t.py_create
File "h5py/h5t.pyx", line 1652, in h5py.h5t.py_create
File "h5py/h5t.pyx", line 1707, in h5py.h5t.py_create
TypeError: Object dtype dtype('O') has no native HDF5 equivalent
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment