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jjkoehorst/Graphdb erros Secret

Created June 23, 2017 06:04
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Graphdb erros
➜ graphdb-free-8.0.2 ./bin/graphdb|
[INFO ] 2017-06-23 07:51:47,223 [main | c.o.g.Config] Using 'file:/ssd/graphdb-free-8.0.2/conf/logback.xml' as logback's configuration file for graphdb|
[INFO ] 2017-06-23 07:51:47,396 [main | c.o.g.s.GraphDB] Starting GraphDB in workbench mode.|
[INFO ] 2017-06-23 07:51:53,722 [localhost-startStop-1 | c.o.g.Config] GraphDB Home directory: /ssd/graphdb-free-8.0.2|
[INFO ] 2017-06-23 07:51:53,723 [localhost-startStop-1 | c.o.g.Config] GraphDB Config directory: /ssd/graphdb-free-8.0.2/conf|
[INFO ] 2017-06-23 07:51:53,723 [localhost-startStop-1 | c.o.g.Config] GraphDB Data directory: /ssd/graphdb-free-8.0.2/data|
[INFO ] 2017-06-23 07:51:53,723 [localhost-startStop-1 | c.o.g.Config] GraphDB Work directory: /ssd/graphdb-free-8.0.2/work|
[INFO ] 2017-06-23 07:51:53,723 [localhost-startStop-1 | c.o.g.Config] GraphDB Logs directory: /ssd/graphdb-free-8.0.2/logs|
[WARN ] 2017-06-23 07:51:55,235 [localhost-startStop-1 | o.s.w.c.s.XmlWebApplicationContext] Exception encountered during context initialization - cancelling refresh attempt|
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fileTasksExecutor': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'repositoryActionClassHierarchyListener' defined in URL [jar:file:/ssd/graphdb-free-8.0.2/lib/workbench/WEB-INF/lib/graphdb-framework-graph-explore-8.0.2.jar!/com/ontotext/forest/graphexplore/listener/RepositoryActionClassHierarchyListener.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.ontotext.forest.graphexplore.service.ClassHierachyStorageService]: : Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception i|
s java.lang.NullPointerException|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1566)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:755)|
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)|
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)|
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)|
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)|
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)|
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4812)|
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5255)|
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)|
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1408)|
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1398)|
at java.util.concurrent.FutureTask.run(FutureTask.java:266)|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)|
at java.lang.Thread.run(Thread.java:745)|
||
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'repositoryActionClassHierarchyListener' defined in URL [jar:file:/ssd/graphdb-free-8.0.2/lib/workbench/WEB-INF/lib/graphdb-framework-graph-explore-8.0.2.jar!/com/ontotext/forest/graphexplore/listener/RepositoryActionClassHierarchyListener.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.ontotext.forest.graphexplore.service.ClassHierachyStorageService]: : Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException|
at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:749)|
at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:185)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1139)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1042)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199)|
at org.springframework.context.event.AbstractApplicationEventMulticaster.retrieveApplicationListeners(AbstractApplicationEventMulticaster.java:223)|
at org.springframework.context.event.AbstractApplicationEventMulticaster.getApplicationListeners(AbstractApplicationEventMulticaster.java:180)|
at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:117)|
at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:331)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.publishLocationEvent(SemanticDataManagement.java:127)|
at com.ontotext.forest.core.semantic.LastRunSemanticStateHelper.initLocationAndRepositoryOnce(LastRunSemanticStateHelper.java:74)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocation(SemanticDataManagement.java:243)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocation(SemanticDataManagement.java:234)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocationOrThrow(SemanticDataManagement.java:257)|
at com.ontotext.forest.impex.ImportStatusService.clear(ImportStatusService.java:60)|
at com.ontotext.forest.impex.ImportTasksExecutor.updateInterrupted(ImportTasksExecutor.java:82)|
at com.ontotext.forest.impex.ImportTasksExecutor.createStatusService(ImportTasksExecutor.java:73)|
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)|
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)|
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)|
at java.lang.reflect.Method.invoke(Method.java:498)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)|
... 23 common frames omitted|
||
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1566)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1120)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1044)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:942)|
at org.springframework.beans.factory.support.ConstructorResolver.resolveAutowiredArgument(ConstructorResolver.java:813)|
at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:741)|
... 51 common frames omitted|
||
Caused by: java.lang.NullPointerException: null|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getUniqueLocationId(SemanticDataManagement.java:229)|
at com.ontotext.forest.graphexplore.service.ClassHierachyStorageService.initClassHierarchy(ClassHierachyStorageService.java:76)|
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)|
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)|
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)|
at java.lang.reflect.Method.invoke(Method.java:498)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)|
... 64 common frames omitted|
||
[INFO ] 2017-06-23 07:51:55,252 [localhost-startStop-1 | c.o.f.c.s.SemanticDataManagement] Shutting down current semantic location|
[ERROR] 2017-06-23 07:51:55,253 [localhost-startStop-1 | o.s.w.c.ContextLoader] Context initialization failed|
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fileTasksExecutor': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'repositoryActionClassHierarchyListener' defined in URL [jar:file:/ssd/graphdb-free-8.0.2/lib/workbench/WEB-INF/lib/graphdb-framework-graph-explore-8.0.2.jar!/com/ontotext/forest/graphexplore/listener/RepositoryActionClassHierarchyListener.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.ontotext.forest.graphexplore.service.ClassHierachyStorageService]: : Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception i|
s java.lang.NullPointerException|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1566)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:755)|
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)|
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)|
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)|
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)|
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)|
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4812)|
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5255)|
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)|
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1408)|
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1398)|
at java.util.concurrent.FutureTask.run(FutureTask.java:266)|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)|
at java.lang.Thread.run(Thread.java:745)|
||
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'repositoryActionClassHierarchyListener' defined in URL [jar:file:/ssd/graphdb-free-8.0.2/lib/workbench/WEB-INF/lib/graphdb-framework-graph-explore-8.0.2.jar!/com/ontotext/forest/graphexplore/listener/RepositoryActionClassHierarchyListener.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.ontotext.forest.graphexplore.service.ClassHierachyStorageService]: : Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException|
at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:749)|
at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:185)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1139)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1042)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199)|
at org.springframework.context.event.AbstractApplicationEventMulticaster.retrieveApplicationListeners(AbstractApplicationEventMulticaster.java:223)|
at org.springframework.context.event.AbstractApplicationEventMulticaster.getApplicationListeners(AbstractApplicationEventMulticaster.java:180)|
at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:117)|
at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:331)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.publishLocationEvent(SemanticDataManagement.java:127)|
at com.ontotext.forest.core.semantic.LastRunSemanticStateHelper.initLocationAndRepositoryOnce(LastRunSemanticStateHelper.java:74)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocation(SemanticDataManagement.java:243)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocation(SemanticDataManagement.java:234)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocationOrThrow(SemanticDataManagement.java:257)|
at com.ontotext.forest.impex.ImportStatusService.clear(ImportStatusService.java:60)|
at com.ontotext.forest.impex.ImportTasksExecutor.updateInterrupted(ImportTasksExecutor.java:82)|
at com.ontotext.forest.impex.ImportTasksExecutor.createStatusService(ImportTasksExecutor.java:73)|
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)|
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)|
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)|
at java.lang.reflect.Method.invoke(Method.java:498)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)|
... 23 common frames omitted|
||
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1566)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1120)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1044)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:942)|
at org.springframework.beans.factory.support.ConstructorResolver.resolveAutowiredArgument(ConstructorResolver.java:813)|
at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:741)|
... 51 common frames omitted|
||
Caused by: java.lang.NullPointerException: null|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getUniqueLocationId(SemanticDataManagement.java:229)|
at com.ontotext.forest.graphexplore.service.ClassHierachyStorageService.initClassHierarchy(ClassHierachyStorageService.java:76)|
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)|
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)|
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)|
at java.lang.reflect.Method.invoke(Method.java:498)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)|
... 64 common frames omitted|
||
[ERROR] 2017-06-23 07:51:55,256 [localhost-startStop-1 | o.a.c.c.C.[.[.[/]] Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener|
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fileTasksExecutor': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'repositoryActionClassHierarchyListener' defined in URL [jar:file:/ssd/graphdb-free-8.0.2/lib/workbench/WEB-INF/lib/graphdb-framework-graph-explore-8.0.2.jar!/com/ontotext/forest/graphexplore/listener/RepositoryActionClassHierarchyListener.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.ontotext.forest.graphexplore.service.ClassHierachyStorageService]: : Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception i|
s java.lang.NullPointerException|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1566)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:755)|
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)|
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)|
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)|
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)|
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)|
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4812)|
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5255)|
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)|
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1408)|
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1398)|
at java.util.concurrent.FutureTask.run(FutureTask.java:266)|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)|
at java.lang.Thread.run(Thread.java:745)|
||
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'repositoryActionClassHierarchyListener' defined in URL [jar:file:/ssd/graphdb-free-8.0.2/lib/workbench/WEB-INF/lib/graphdb-framework-graph-explore-8.0.2.jar!/com/ontotext/forest/graphexplore/listener/RepositoryActionClassHierarchyListener.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.ontotext.forest.graphexplore.service.ClassHierachyStorageService]: : Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException|
at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:749)|
at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:185)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1139)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1042)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199)|
at org.springframework.context.event.AbstractApplicationEventMulticaster.retrieveApplicationListeners(AbstractApplicationEventMulticaster.java:223)|
at org.springframework.context.event.AbstractApplicationEventMulticaster.getApplicationListeners(AbstractApplicationEventMulticaster.java:180)|
at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:117)|
at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:331)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.publishLocationEvent(SemanticDataManagement.java:127)|
at com.ontotext.forest.core.semantic.LastRunSemanticStateHelper.initLocationAndRepositoryOnce(LastRunSemanticStateHelper.java:74)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocation(SemanticDataManagement.java:243)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocation(SemanticDataManagement.java:234)|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getCurrentLocationOrThrow(SemanticDataManagement.java:257)|
at com.ontotext.forest.impex.ImportStatusService.clear(ImportStatusService.java:60)|
at com.ontotext.forest.impex.ImportTasksExecutor.updateInterrupted(ImportTasksExecutor.java:82)|
at com.ontotext.forest.impex.ImportTasksExecutor.createStatusService(ImportTasksExecutor.java:73)|
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)|
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)|
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)|
at java.lang.reflect.Method.invoke(Method.java:498)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)|
... 23 common frames omitted|
||
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'classHierachyStorageService': Invocation of init method failed; nested exception is java.lang.NullPointerException|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1566)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)|
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)|
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)|
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)|
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)|
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1120)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1044)|
at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:942)|
at org.springframework.beans.factory.support.ConstructorResolver.resolveAutowiredArgument(ConstructorResolver.java:813)|
at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:741)|
... 51 common frames omitted|
||
Caused by: java.lang.NullPointerException: null|
at com.ontotext.forest.core.semantic.SemanticDataManagement.getUniqueLocationId(SemanticDataManagement.java:229)|
at com.ontotext.forest.graphexplore.service.ClassHierachyStorageService.initClassHierarchy(ClassHierachyStorageService.java:76)|
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)|
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)|
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)|
at java.lang.reflect.Method.invoke(Method.java:498)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300)|
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)|
... 64 common frames omitted|
||
[ERROR] 2017-06-23 07:51:55,257 [localhost-startStop-1 | o.a.c.c.StandardContext] One or more listeners failed to start. Full details will be found in the appropriate container log file|
[ERROR] 2017-06-23 07:51:55,264 [localhost-startStop-1 | o.a.c.c.StandardContext] Context [] startup failed due to previous errors|
[WARN ] 2017-06-23 07:51:55,280 [localhost-startStop-1 | o.a.c.l.WebappClassLoaderBase] The web application [ROOT] appears to have started a thread named [ExpiredBlacklistCollector] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:|
java.lang.Thread.sleep(Native Method)|
com.ontotext.forest.security.persistence.MapDBBlacklistService$ExpiredBlacklistCollector.run(MapDBBlacklistService.java:112)|
java.lang.Thread.run(Thread.java:745)|
||
[INFO ] 2017-06-23 07:51:55,304 [main | c.o.g.s.GraphDB] Started GraphDB in workbench mode at port 7200.|
[INFO ] 2017-06-23 07:52:29,801 [Thread-2 | c.o.g.s.GraphDB] Stopping GraphDB.|
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