James Bonfield jkbonfield

## add_meth2.pl
#!/usr/bin/perl -w

# Uses figures from https://www.biorxiv.org/content/early/2016/03/15/043794
# to add random C methylation to a SAM file, storing in a variety of ways.

use strict;

srand(0);

my $method = shift(@ARGV);

## filter_delta16_opt2.c
#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <unistd.h>
#include <inttypes.h>

#ifndef MAXD
#define MAXD 15
#endif

## IMG_1517.JPG

      
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                IMG_1517.JPG
              
          
## ksprintf.c
#include <stdio.h>
#include <stdlib.h>
#include <stdint.h>
#include <string.h>
#include <math.h>

typedef struct __kstring_t {
	size_t l, m;
	char *s;
} kstring_t;

## _.cram

      
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	#!/usr/bin/perl -w

	# Uses figures from https://www.biorxiv.org/content/early/2016/03/15/043794
	# to add random C methylation to a SAM file, storing in a variety of ways.

	use strict;

	srand(0);

	my $method = shift(@ARGV);
	#include <stdio.h>
	#include <string.h>
	#include <stdlib.h>
	#include <unistd.h>
	#include <inttypes.h>

	#ifndef MAXD
	#define MAXD 15
	#endif
	#include <stdio.h>
	#include <stdlib.h>
	#include <stdint.h>
	#include <string.h>
	#include <math.h>

	typedef struct __kstring_t {
	size_t l, m;
	char *s;
	} kstring_t;