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java.lang.ArrayIndexOutOfBoundsException: 1
at core.org.akaza.openclinica.bean.extract.DatasetBean.sqlWithUniqeItemIds(DatasetBean.java:617) ~[classes/:na]
at org.akaza.openclinica.control.extract.CreateDatasetServlet.finalUpateDatasetBean(CreateDatasetServlet.java:1054) ~[classes/:na]
at org.akaza.openclinica.control.extract.CreateDatasetServlet.processRequest(CreateDatasetServlet.java:448) ~[classes/:na]
at org.akaza.openclinica.control.core.SecureController.process(SecureController.java:684) [classes/:na]
at org.akaza.openclinica.control.core.SecureController.doPost(SecureController.java:778) [classes/:na]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:648) [servlet-api.jar:na]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) [servlet-api.jar:na]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:292) [catalina.jar:8.0.39]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207) [catalina.ja
@jkeremian
jkeremian / gist:de73d3052d6bc59e307185a30fa425fb
Created August 29, 2019 15:21
Error at tomcat start up
at org.springframework.web.client.RestTemplate.handleResponse(RestTemplate.java:709) ~[spring-web-4.3.24.RELEASE.jar:4.3.24.RELEASE]
at org.springframework.web.client.RestTemplate.doExecute(RestTemplate.java:662) ~[spring-web-4.3.24.RELEASE.jar:4.3.24.RELEASE]
at org.springframework.web.client.RestTemplate.execute(RestTemplate.java:622) ~[spring-web-4.3.24.RELEASE.jar:4.3.24.RELEASE]
at org.springframework.web.client.RestTemplate.exchange(RestTemplate.java:568) ~[spring-web-4.3.24.RELEASE.jar:4.3.24.RELEASE]
at org.akaza.openclinica.service.StudyBuildServiceImpl.getModuleConfigsFromStudyService(StudyBuildServiceImpl.java:561) ~[classes/:na]
at org.akaza.openclinica.service.StudyBuildServiceImpl$$FastClassBySpringCGLIB$$e00e739e.invoke(<generated>) ~[classes/:na]
at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204) ~[spring-core-4.3.24.RELEASE.jar:4.3.24.RELEASE]
at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:736) ~[spr
2019-01-22 12:30:12,303 [http-nio-8091-exec-1] ERROR org.hibernate.internal.ExceptionMapperStandardImpl - HHH000346: Error during managed flush [Batch update returned unexpected row count from update [0]; actual row count: 0; expected: 1]
UserAccountHelper:
org.springframework.orm.hibernate5.HibernateOptimisticLockingFailureException: Batch update returned unexpected row count from update [0]; actual row count: 0; expected: 1; nested exception is org.hibernate.StaleStateException: Batch update returned unexpected row count from update [0]; actual row count: 0; expected: 1
at org.springframework.orm.hibernate5.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:283) ~[spring-orm-4.3.18.RELEASE.jar:4.3.18.RELEASE]
at org.springframework.orm.hibernate5.HibernateTransactionManager.convertHibernateAccessException(HibernateTransactionManager.java:755) ~[spring-orm-4.3.18.RELEASE.jar:4.3.18.RELEASE]
at org.springframework.orm.hibernate5.HibernateTransactionManager.doCommit(HibernateTransa
{
"_format": "oc-board-1.3.0",
"_id": "pzhuXbLpSbbBrobiG",
"title": "Study001",
"studyUuid": "141f03d8-d0aa-442a-bbfb-1af9d98517f3",
"permission": "public",
"members": [
{
"userId": "6aFQWv76WmxPWHvkD",
"isAdmin": true,
2018-05-21 16:49:48,596 ERROR [XNIO-2 task-1] ExceptionTranslator: Internal server error
org.springframework.web.client.HttpServerErrorException: 500 Internal Server Error
at org.springframework.web.client.DefaultResponseErrorHandler.handleError(DefaultResponseErrorHandler.java:94)
at org.springframework.web.client.RestTemplate.handleResponse(RestTemplate.java:700)
at org.springframework.web.client.RestTemplate.doExecute(RestTemplate.java:653)
at org.springframework.web.client.RestTemplate.execute(RestTemplate.java:613)
at org.springframework.web.client.RestTemplate.exchange(RestTemplate.java:531)
at org.springframework.web.client.RestTemplate$$FastClassBySpringCGLIB$$aa4e9ed0.invoke(<generated>)
at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204)
at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:721)
<ODM xmlns="http://www.cdisc.org/ns/odm/v1.3" xmlns:OpenClinica="http://www.openclinica.org/ns/odm_ext_v130/v3.1" xmlns:OpenClinicaRules="http://www.openclinica.org/ns/rules/v3.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" FileOID="Study-MetaD20180313143552-0400" Description="Study Metadata" CreationDateTime="2018-03-13T14:35:52-04:00" FileType="Snapshot" ODMVersion="1.3" xsi:schemaLocation="http://www.cdisc.org/ns/odm/v1.3 OpenClinica-ODM1-3-0-OC3-0.xsd">
<Study OID="S_K7(TEST)">
<GlobalVariables>
<StudyName>Study K7</StudyName>
<StudyDescription></StudyDescription>
<ProtocolName>K7</ProtocolName>
</GlobalVariables>
<MetaDataVersion OID="v1.0.0" Name="MetaDataVersion_v1.0.0">
<Protocol>
<StudyEventRef StudyEventOID="SE_EVENT1" OrderNumber="1" Mandatory="Yes"/>
<ODM xmlns="http://www.cdisc.org/ns/odm/v1.3" xmlns:OpenClinica="http://www.openclinica.org/ns/odm_ext_v130/v3.1" xmlns:OpenClinicaRules="http://www.openclinica.org/ns/rules/v3.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" FileOID="Study-MetaD20180313143022-0400" Description="Study Metadata" CreationDateTime="2018-03-13T14:30:22-04:00" FileType="Snapshot" ODMVersion="1.3" xsi:schemaLocation="http://www.cdisc.org/ns/odm/v1.3 OpenClinica-ODM1-3-0-OC3-0.xsd">
<Study OID="S_K7(TEST)">
<GlobalVariables>
<StudyName>Study K7</StudyName>
<StudyDescription></StudyDescription>
<ProtocolName>K7</ProtocolName>
</GlobalVariables>
<MetaDataVersion OID="v1.0.0" Name="MetaDataVersion_v1.0.0">
<Protocol>
<StudyEventRef StudyEventOID="SE_EVENT1" OrderNumber="1" Mandatory="Yes"/>
This XML file does not appear to have any style information associated with it. The document tree is shown below.
<ODM xmlns="http://www.cdisc.org/ns/odm/v1.3" xmlns:OpenClinica="http://www.openclinica.org/ns/odm_ext_v130/v3.1" xmlns:OpenClinicaRules="http://www.openclinica.org/ns/rules/v3.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" FileOID="Study-MetaD20180308163048-0500" Description="Study Metadata" CreationDateTime="2018-03-08T16:30:48-05:00" FileType="Snapshot" ODMVersion="1.3" xsi:schemaLocation="http://www.cdisc.org/ns/odm/v1.3 OpenClinica-ODM1-3-0-OC3-0.xsd">
<Study OID="S_K6(TEST)">
<GlobalVariables>
<StudyName>Study k6</StudyName>
<StudyDescription></StudyDescription>
<ProtocolName>K6</ProtocolName>
</GlobalVariables>
<MetaDataVersion OID="v1.0.0" Name="MetaDataVersion_v1.0.0">
<Protocol>
{
"@xmlns": "http://www.cdisc.org/ns/odm/v1.3",
"@xmlns:OpenClinica": "http://www.openclinica.org/ns/odm_ext_v130/v3.1",
"@xmlns:OpenClinicaRules": "http://www.openclinica.org/ns/rules/v3.1",
"@xmlns:xsi": "http://www.w3.org/2001/XMLSchema-instance",
"@FileOID": "Study-MetaD20180308162824-0500",
"@Description": "Study Metadata",
"@CreationDateTime": "2018-03-08T16:28:24-05:00",
"@FileType": "Snapshot",
"@ODMVersion": "1.3",
@jkeremian
jkeremian / gist:3ea676fdbcba7720e6121296593b75c2
Created December 11, 2017 20:07
Getting Liquibase error when starting tomcat in OC4
==> /usr/local/bin/apache-tomcat-8.0.39/logs/openclinica.log <==
2017-12-11 15:05:16,430 ERROR [localhost-startStop-1] o.s.w.c.ContextLoader [ContextLoader.java:350] Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'liquibase' defined in org.akaza.openclinica.core.LiquibaseConfig: Invocation of init method failed; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1628) ~[spring-beans-4.3.7.RELEASE.jar:4.3.7.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555) ~[spring-beans-4.3.7.RELEASE.jar:4.3.7.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483) ~[spring-beans-4.3.7.RELEASE.jar:4.3.7.RELEASE]
at org.springframework.bea