SYNPY-1128

conda_deps.txt

_ipyw_jlab_nb_ext_conf==0.1.0
alabaster==0.7.12
anaconda==2018.12
anaconda-client==1.7.2
anaconda-navigator==1.9.6
anaconda-project==0.8.2
asn1crypto==0.24.0
astroid==2.1.0
astropy==3.1
atomicwrites==1.2.1
attrs==18.2.0
babel==2.6.0
backcall==0.1.0
backports==1.0
backports.os==0.1.1
backports.shutil_get_terminal_size==1.0.0
beautifulsoup4==4.6.3
bitarray==0.8.3
bkcharts==0.2
blas==1.0
blaze==0.11.3
bleach==3.0.2
blosc==1.14.4
bokeh==1.0.2
boto==2.49.0
bottleneck==1.2.1
bzip2==1.0.6
ca-certificates==2018.03.07
cairo==1.14.12
certifi==2018.11.29
cffi==1.11.5
chardet==3.0.4
click==7.0
cloudpickle==0.6.1
clyent==1.2.2
colorama==0.4.1
conda==4.5.12
conda-build==3.17.6
conda-env==2.6.0
conda-verify==3.1.1
contextlib2==0.5.5
cryptography==2.4.2
curl==7.63.0
cycler==0.10.0
cython==0.29.2
cytoolz==0.9.0.1
dask==1.0.0
dask-core==1.0.0
datashape==0.5.4
dbus==1.13.2
decorator==4.3.0
defusedxml==0.5.0
Deprecated==1.2.12
distributed==1.25.1
docutils==0.14
entrypoints==0.2.3
et_xmlfile==1.0.1
expat==2.2.6
fastcache==1.0.2
filelock==3.0.10
flask==1.0.2
flask-cors==3.0.7
fontconfig==2.13.0
freetype==2.9.1
fribidi==1.0.5
future==0.17.1
get_terminal_size==1.0.0
gevent==1.3.7
glib==2.56.2
glob2==0.6
gmp==6.1.2
gmpy2==2.0.8
graphite2==1.3.12
greenlet==0.4.15
gst-plugins-base==1.14.0
gstreamer==1.14.0
h5py==2.8.0
harfbuzz==1.8.8
hdf5==1.10.2
heapdict==1.0.0
html5lib==1.0.1
icu==58.2
idna==2.8
imageio==2.4.1
imagesize==1.1.0
importlib_metadata==0.6
intel-openmp==2019.1
ipykernel==5.1.0
ipython==7.2.0
ipython_genutils==0.2.0
ipywidgets==7.4.2
isort==4.3.4
itsdangerous==1.1.0
jbig==2.1
jdcal==1.4
jedi==0.13.2
jeepney==0.4
jinja2==2.10
jpeg==9b
jsonschema==2.6.0
jupyter==1.0.0
jupyter_client==5.2.4
jupyter_console==6.0.0
jupyter_core==4.4.0
jupyterlab==0.35.3
jupyterlab_server==0.2.0
#keyring==12.0.2
keyrings.alt==3.1
kiwisolver==1.0.1
krb5==1.16.1
lazy-object-proxy==1.3.1
libarchive==3.3.3
libcurl==7.63.0
libedit==3.1.20170329
libffi==3.2.1
libgcc-ng==8.2.0
libgfortran-ng==7.3.0
liblief==0.9.0
libpng==1.6.35
libsodium==1.0.16
libssh2==1.8.0
libstdcxx-ng==8.2.0
libtiff==4.0.9
libtool==2.4.6
libuuid==1.0.3
libxcb==1.13
libxml2==2.9.8
libxslt==1.1.32
llvmlite==0.26.0
locket==0.2.0
lxml==4.2.5
lz4-c==1.8.1.2
lzo==2.10
markupsafe==1.1.0
matplotlib==3.0.2
mccabe==0.6.1
mistune==0.8.4
mkl==2019.1
mkl-service==1.1.2
mkl_fft==1.0.6
mkl_random==1.0.2
more-itertools==4.3.0
mpc==1.1.0
mpfr==4.0.1
mpmath==1.1.0
msgpack-python==0.5.6
multipledispatch==0.6.0
navigator-updater==0.2.1
nbconvert==5.4.0
nbformat==4.4.0
ncurses==6.1
networkx==2.2
nltk==3.4
nose==1.3.7
notebook==5.7.4
numba==0.41.0
numexpr==2.6.8
numpy==1.15.4
numpy-base==1.15.4
numpydoc==0.8.0
odo==0.5.1
olefile==0.46
openpyxl==2.5.12
openssl==1.1.1a
packaging==18.0
pandas==0.23.4
pandoc==1.19.2.1
pandocfilters==1.4.2
pango==1.42.4
parso==0.3.1
partd==0.3.9
patchelf==0.9
path.py==11.5.0
pathlib2==2.3.3
patsy==0.5.1
pcre==8.42
pep8==1.7.1
pexpect==4.6.0
pickleshare==0.7.5
pillow==5.3.0
#pip==21.0.1
pip==18.1
pixman==0.34.0
pkginfo==1.4.2
pluggy==0.8.0
ply==3.11
prometheus_client==0.5.0
prompt_toolkit==2.0.7
psutil==5.4.8
ptyprocess==0.6.0
py==1.7.0
py-lief==0.9.0
pycodestyle==2.4.0
pycosat==0.6.3
pycparser==2.19
pycrypto==2.6.1
pycurl==7.43.0.2
pyflakes==2.0.0
pygments==2.3.1
pylint==2.2.2
pyodbc==4.0.25
pyopenssl==18.0.0
pyparsing==2.3.0
pyqt==5.9.2
pysocks==1.6.8
pytables==3.4.4
pytest==4.0.2
pytest-arraydiff==0.3
pytest-astropy==0.5.0
pytest-doctestplus==0.2.0
pytest-openfiles==0.3.1
pytest-remotedata==0.3.1
python==3.7.1
python-dateutil==2.7.5
python-libarchive-c==2.8
pytz==2018.7
pywavelets==1.0.1
pyyaml==3.13
pyzmq==17.1.2
qt==5.9.7
qtawesome==0.5.3
qtconsole==4.4.3
qtpy==1.5.2
readline==7.0
#requests==2.25.1
requests==2.21.0
rope==0.11.0
ruamel_yaml==0.15.46
scikit-image==0.14.1
scikit-learn==0.20.1
scipy==1.1.0
seaborn==0.9.0
#SecretStorage==2.3.1
#secretstorage==3.1.0
send2trash==1.5.0
setuptools==40.6.3
simplegeneric==0.8.1
singledispatch==3.4.0.3
sip==4.19.8
six==1.12.0
snappy==1.1.7
snowballstemmer==1.2.1
sortedcollections==1.0.1
sortedcontainers==2.1.0
sphinx==1.8.2
sphinxcontrib==1.0
sphinxcontrib-websupport==1.1.0
spyder==3.3.2
spyder-kernels==0.3.0
sqlalchemy==1.2.15
sqlite==3.26.0
statsmodels==0.9.0
sympy==1.3
#synapseclient==2.3.0
tblib==1.3.2
terminado==0.8.1
testpath==0.4.2
tk==8.6.8
toolz==0.9.0
tornado==5.1.1
tqdm==4.28.1
traitlets==4.3.2
unicodecsv==0.14.1
unixodbc==2.3.7
urllib3==1.24.1
wcwidth==0.1.7
webencodings==0.5.1
werkzeug==0.14.1
wheel==0.32.3
widgetsnbextension==3.4.2
wrapt==1.10.11
wurlitzer==1.0.2
xlrd==1.2.0
xlsxwriter==1.1.2
xlwt==1.3.0
xz==5.2.4
yaml==0.1.7
zeromq==4.2.5
zict==0.1.3
zlib==1.2.11
zstd==1.3.7 

Dockerfile

FROM ubuntu:18.04

RUN apt-get update && \
    apt-get install -y gcc libcurl4-openssl-dev libssl-dev wget

RUN wget https://repo.anaconda.com/archive/Anaconda2-2018.12-Linux-x86_64.sh
RUN bash Anaconda2-2018.12-Linux-x86_64.sh -bp

ENV PATH /root/anaconda2/bin:$PATH

RUN conda create -y python=3.7.1 -n synapse
COPY pip_deps.txt /tmp
COPY conda_deps.txt /tmp/
RUN /bin/bash -c "source activate synapse && pip install wheel && pip install -r /tmp/pip_deps.txt && conda install -y --file /tmp/conda_deps.txt"

CMD /bin/bash
 

pip_deps.txt

alabaster==0.7.12
asn1crypto==0.24.0
astroid==2.1.0
astropy==3.1
atomicwrites==1.2.1
attrs==18.2.0
Babel==2.6.0
backcall==0.1.0
backports.os==0.1.1
backports.shutil-get-terminal-size==1.0.0
beautifulsoup4==4.6.3
bitarray==0.8.3
bkcharts==0.2
bleach==3.0.2
bokeh==1.0.2
boto==2.49.0
Bottleneck==1.2.1
certifi==2018.11.29
cffi==1.11.5
chardet==3.0.4
Click==7.0
cloudpickle==0.6.1
colorama==0.4.1
contextlib2==0.5.5
cryptography==2.4.2
cycler==0.10.0
Cython==0.29.2
cytoolz==0.9.0.1
dask==1.0.0
decorator==4.3.0
defusedxml==0.5.0
Deprecated==1.2.12
distributed==1.25.1
docutils==0.14
entrypoints==0.2.3
et-xmlfile==1.0.1
fastcache==1.0.2
filelock==3.0.10
Flask==1.0.2
Flask-AutoIndex==0.6.2
Flask-Cors==3.0.7
Flask-Silk==0.2
future==0.17.1
gevent==1.3.7
glob2==0.6
#gmpy2==2.0.8
greenlet==0.4.15
h5py==2.8.0
heapdict==1.0.0
html5lib==1.0.1
idna==2.8
imageio==2.4.1
imagesize==1.1.0
importlib-metadata==0.6
ipykernel==5.1.0
ipython==7.2.0
ipython-genutils==0.2.0
ipywidgets==7.4.2
isort==4.3.4
itsdangerous==1.1.0
jdcal==1.4
jedi==0.13.2
jeepney==0.4
Jinja2==2.10
jsonschema==2.6.0
jupyter==1.0.0
jupyter-client==5.2.4
jupyter-console==6.0.0
jupyter-core==4.4.0
jupyterlab==0.35.3
jupyterlab-server==0.2.0
keyring==12.0.2
keyrings.alt==3.1
kiwisolver==1.0.1
lazy-object-proxy==1.3.1
libarchive-c==2.8
#lief==0.9.0
llvmlite==0.26.0
locket==0.2.0
lxml==4.2.5
MarkupSafe==1.1.0
matplotlib==3.0.2
mccabe==0.6.1
mistune==0.8.4
more-itertools==4.3.0
mpmath==1.1.0
msgpack==0.5.6
multipledispatch==0.6.0
nbconvert==5.4.0
nbformat==4.4.0
networkx==2.2
nltk==3.4
nose==1.3.7
notebook==5.7.4
numba==0.41.0
numexpr==2.6.8
numpy==1.15.4
numpydoc==0.8.0
olefile==0.46
openpyxl==2.5.12
packaging==18.0
pandas==0.23.4
pandocfilters==1.4.2
parso==0.3.1
partd==0.3.9
path.py==11.5.0
pathlib2==2.3.3
patsy==0.5.1
pep8==1.7.1
pexpect==4.6.0
pickleshare==0.7.5
Pillow==5.3.0
pip==21.0.1
pkginfo==1.4.2
pluggy==0.8.0
ply==3.11
prometheus-client==0.5.0
prompt-toolkit==2.0.7
psutil==5.4.8
ptyprocess==0.6.0
py==1.7.0
pycodestyle==2.4.0
pycosat==0.6.3
pycparser==2.19
pycrypto==2.6.1
pycurl==7.43.0.2
pyflakes==2.0.0
Pygments==2.3.1
pylint==2.2.2
#pyodbc==4.0.25
pyOpenSSL==18.0.0
pyparsing==2.3.0
PySocks==1.6.8
pytest==4.0.2
pytest-arraydiff==0.3
pytest-astropy==0.5.0
pytest-doctestplus==0.2.0
pytest-openfiles==0.3.1
pytest-remotedata==0.3.1
python-dateutil==2.7.5
pytz==2018.7
PyWavelets==1.0.1
PyYAML==3.13
pyzmq==17.1.2
QtAwesome==0.5.3
qtconsole==4.4.3
QtPy==1.5.2
requests==2.25.1
rope==0.11.0
ruamel-yaml==0.15.46
scikit-image==0.14.1
scikit-learn==0.20.1
scipy==1.1.0
seaborn==0.9.0
SecretStorage==2.3.1
Send2Trash==1.5.0
setuptools==40.6.3
simplegeneric==0.8.1
singledispatch==3.4.0.3
six==1.12.0
snowballstemmer==1.2.1
sortedcollections==1.0.1
sortedcontainers==2.1.0
Sphinx==1.8.2
sphinxcontrib-websupport==1.1.0
spyder==3.3.2
spyder-kernels==0.3.0
SQLAlchemy==1.2.15
statsmodels==0.9.0
sympy==1.3
synapseclient==2.3.0
tblib==1.3.2
terminado==0.8.1
testpath==0.4.2
toolz==0.9.0
tornado==5.1.1
tqdm==4.28.1
traitlets==4.3.2
unicodecsv==0.14.1
urllib3==1.24.1
wcwidth==0.1.7
webencodings==0.5.1
Werkzeug==0.14.1
wheel==0.32.3
widgetsnbextension==3.4.2
wrapt==1.10.11
wurlitzer==1.0.2
xlrd==1.2.0
XlsxWriter==1.1.2
xlwt==1.3.0
zict==0.1.3