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OpenMRS module dependency visualization
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index.html
<!DOCTYPE html>
<meta charset="utf-8">
<style>
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fill: none;
stroke: #666;
stroke-width: 1px;
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<script>
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Rwanda","target":"htmlformflowsheet","org":"PIH","targetOrg":"openmrs"},{"source":"dataintegrityworkflow","label":"Data Integrity Workflow Module","target":"dataintegrity","org":"openmrs","targetOrg":"openmrs"},{"source":"bedmanagement","label":"Bed Management Module","target":"webservices.rest","org":"RetroBahmni","targetOrg":"openmrs"},{"source":"settingsapp","label":"Settings App Module","target":"webservices.rest","org":"rkorytkowski","targetOrg":"openmrs"},{"source":"openhmis.pharmacy","label":"OpenHMIS Pharmacy Module Module","target":"webservices.rest","org":"OpenHMIS","targetOrg":"openmrs"},{"source":"openhmis.pharmacy","label":"OpenHMIS Pharmacy Module Module","target":"openhmis.commons","org":"OpenHMIS","targetOrg":"Not Found"},{"source":"openhmis.pharmacy","label":"OpenHMIS Pharmacy Module Module","target":"openhmis.backboneforms","org":"OpenHMIS","targetOrg":"OpenHMIS"},{"source":"openhmis.pharmacy","label":"OpenHMIS Pharmacy Module Module","target":"openhmis.workorder","org":"OpenHMIS","targetOrg":"OpenHMIS"},{"source":"patientnarratives","label":"Patient Narratives","target":"htmlformentry","org":"openmrs","targetOrg":"openmrs"},{"source":"patientnarratives","label":"Patient Narratives","target":"xforms","org":"openmrs","targetOrg":"openmrs"},{"source":"muzimapreferredform","label":"Muzima Preferred Form Module","target":"reporting","org":"muzima","targetOrg":"openmrs"},{"source":"muzimapreferredform","label":"Muzima Preferred Form Module","target":"muzima","org":"muzima","targetOrg":"muzima"},{"source":"caching","label":"Caching","target":"serialization.xstream","org":"devcritter","targetOrg":"openmrs"},{"source":"reportingmds","label":"Reporting MDS Module","target":"metadatasharing","org":"openmrs","targetOrg":"openmrs"},{"source":"reportingmds","label":"Reporting MDS Module","target":"reporting","org":"openmrs","targetOrg":"openmrs"},{"source":"shr-rest","label":"SHR REST Interface Module","target":"shr-contenthandler","org":"jembi","targetOrg":"jembi"},{"source":"shr-rest","label":"SHR REST Interface Module","target":"webservices.rest","org":"jembi","targetOrg":"openmrs"},{"source":"vtoxfordnicu","label":"VT Oxford NICU Module","target":"uiframework","org":"nickwilkie","targetOrg":"openmrs"},{"source":"vtoxfordnicu","label":"VT Oxford NICU Module","target":"webservices.rest","org":"nickwilkie","targetOrg":"openmrs"},{"source":"tracnetreportingsdmx","label":"Tracnet Report SDMX-HD Integration","target":"reporting","org":"mseaton","targetOrg":"openmrs"},{"source":"tracnetreportingsdmx","label":"Tracnet Report SDMX-HD Integration","target":"sdmxhdintegration","org":"mseaton","targetOrg":"Not Found"},{"source":"tracnetreportingsdmx","label":"Tracnet Report SDMX-HD Integration","target":"tracnetreporting","org":"mseaton","targetOrg":"Not Found"},{"source":"dcompare","label":"DCompare 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Module","target":"emrapi","org":"openmrs","targetOrg":"openmrs"},{"source":"dispensing","label":"Dispensing Module","target":"appui","org":"openmrs","targetOrg":"openmrs"},{"source":"dispensing","label":"Dispensing Module","target":"htmlformentryui","org":"openmrs","targetOrg":"openmrs"},{"source":"dispensing","label":"Dispensing Module","target":"providermanagement","org":"openmrs","targetOrg":"openmrs"},{"source":"uiframeworkpatientsummarysupport","label":"UI Framework Patient Summary Support Module","target":"uiframework","org":"openmrs","targetOrg":"openmrs"},{"source":"calculation19ext","label":"Calculation 1.9 Extensions","target":"calculation","org":"rkorytkowski","targetOrg":"openmrs"},{"source":"webservices.rest19ext","label":"Rest Web Services 1.9 Extension","target":"webservices.rest","org":"openmrs","targetOrg":"openmrs"},{"source":"spike1","label":"Spike1 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Found"},{"source":"atd","label":"ATD","target":"dss","org":"openmrs","targetOrg":"openmrs"},{"source":"atd","label":"ATD","target":"chirdlutil","org":"openmrs","targetOrg":"openmrs"},{"source":"atd","label":"ATD","target":"chirdlutilbackports","org":"openmrs","targetOrg":"openmrs"},{"source":"cardiologyreport","label":"Cardiology Report","target":"reporting","org":"openmrs","targetOrg":"openmrs"},{"source":"chica","label":"Chica","target":"dss","org":"openmrs","targetOrg":"openmrs"},{"source":"chica","label":"Chica","target":"atd","org":"openmrs","targetOrg":"openmrs"},{"source":"chica","label":"Chica","target":"sockethl7listener","org":"openmrs","targetOrg":"openmrs"},{"source":"chica","label":"Chica","target":"rgccd","org":"openmrs","targetOrg":"openmrs"},{"source":"chica","label":"Chica","target":"chirdlutil","org":"openmrs","targetOrg":"openmrs"},{"source":"chica","label":"Chica","target":"chirdlutilbackports","org":"openmrs","targetOrg":"openmrs"},{"source":"chicaops","label":"Chica Operations","target":"dss","org":"openmrs","targetOrg":"openmrs"},{"source":"chicaops","label":"Chica Operations","target":"atd","org":"openmrs","targetOrg":"openmrs"},{"source":"chicaops","label":"Chica Operations","target":"chirdlutil","org":"openmrs","targetOrg":"openmrs"},{"source":"chicaops","label":"Chica Operations","target":"chirdlutilbackports","org":"openmrs","targetOrg":"openmrs"},{"source":"chicaops","label":"Chica Operations","target":"chica","org":"openmrs","targetOrg":"openmrs"},{"source":"chirdlutil","label":"chirdlutil","target":"chirdlutilbackports","org":"openmrs","targetOrg":"openmrs"},{"source":"datasetbuilder","label":"Dataset Builder","target":"reporting","org":"openmrs","targetOrg":"openmrs"},{"source":"dduipd","label":"DDU ipd module","target":"hospitalcore","org":"openmrs","targetOrg":"Not Found"},{"source":"ddupatientdashboard","label":"DDU Patient Dashboard","target":"hospitalcore","org":"openmrs","targetOrg":"Not Found"},{"source":"ddupatientqueue","label":"ddupatientqueue","target":"hospitalcore","org":"openmrs","targetOrg":"Not Found"},{"source":"dhisconnector","label":"DHIS Connector","target":"mirthmessaging","org":"openmrs","targetOrg":"openmrs"},{"source":"diabetesmanagement","label":"Diabetes 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var TRANSITION_DURATION = 150;
var HIGHLIGHT_COLOR = "#FF4";
var IN_COLOR = "darkblue";
var OUT_COLOR = "red";
var DEFAULT_STROKE = "#666"
var nodes = {};
var orgs = {};
// Compute the distinct nodes from the links.
links.forEach(function(link) {
link.source = nodes[link.source] || (nodes[link.source] = {name: link.source});
link.target = nodes[link.target] || (nodes[link.target] = {name: link.target});
link.source.label = link.label;
link.source.org = link.org;
link.target.ins = link.target.ins + 1 || 1;
link.target.org = link.targetOrg;
// add source and target orgs to orgs object
if (orgs[link.org] == null) { orgs[link.org] = { org: link.org }; }
orgs[link.org].count = orgs[link.org].count + 1 || 1;
if (orgs[link.targetOrg] == null) { orgs[link.targetOrg] = { org: link.targetOrg }; }
orgs[link.targetOrg].count = orgs[link.targetOrg].count + 1 || 1;
});
// convert orgs to an array of objects
var orgArray = [];
var others = 0;
for (var k in orgs) {
// ignore orgs with just one repo
if (orgs[k].count > 1)
orgArray.push(orgs[k]);
else
others++;
}
// sort to put largest at top
orgArray.sort(function(a,b){
return b.count - a.count;
});
// add the catch-all at the bottomn
// orgArray.push({ org: "Other", count: others });
// generate a color scale based on count
var colorscale = d3.scale.linear()
// .domain([2, orgArray[0].count])
.domain([0, orgArray.length/2, orgArray.length])
.interpolate(d3.interpolateRgb)
.range(["#3D89E3", "#CF826D", "#BAA860"]);
// used to return a color based on org name
function colorize(org) {
// return colorscale(orgs[org].count);
for (i=0; i<orgArray.length; i++) {
if (orgArray[i].org == org) {
return colorscale(i);
}
}
}
// dynamically set width and height based on viewport
var width = $("#chart").width() - 20, height = $(document).height() - 50;
// force directed graph settings
var force = d3.layout.force()
.nodes(d3.values(nodes))
.links(links)
.size([width, height])
.linkDistance(120)
.charge(-250)
.on("tick", tick).start();
var svg = d3.select("#chart")
.append("svg")
.attr("width", width)
.attr("height", height)
.append("g")
.call(d3.behavior.zoom().on("zoom", redraw))
.append("g");
// for zooming
var baseplane = svg.append('svg:rect')
.attr('width', width)
.attr('height', height)
.attr('fill', 'white')
.on('click', resetGraph);
var chart = svg.append("g");
// Per-type markers, as they don't inherit styles.
chart.append("defs").selectAll("marker")
.data(["in", "out", "normal"])
.enter()
.append("marker")
.attr("id", function(d) { return d; })
.attr("viewBox", "0 0 6 6")
.attr("refX", 9)
.attr("refY", 3)
.attr("markerWidth", 7)
.attr("markerHeight", 7)
.attr("orient", "auto")
.append("path")
.classed("marker", true)
.style("stroke-width", 0)
.style("opacity", 1)
.attr("d", "M0,3v-3l6,3l-6,3z");
// arrow ends
var path = chart.append("g").selectAll("path")
.data(force.links())
.enter()
.append("path")
.attr("class", function(d) { return "link " + d.org; })
.attr("source", function(d) { return d.source.name; })
.attr("target", function(d) { return d.target.name; })
.style("marker-end", "url(#normal)");
// nodes
var circle = chart.append("g").selectAll("circle")
.data(force.nodes())
.enter()
.append("circle")
.attr("r", function(d){ return d.ins * 0.5 + 4 || 4; })
.attr("source", function(d){ return d.name; })
.attr("org", function(d){ return d.org; })
.style("fill", function(d, i){ return colorize(d.org); })
.style("stroke-width", "0")
.style("stroke", DEFAULT_STROKE)
// .on('mouseover', function(d, i) { transitionIn(d.org); })
// .on('mouseout', function(d, i) { transitionOut(); })
.on('click', function(d) { showPaths(d.name); })
.call(force.drag);
// node labels
var text = chart.append("g").selectAll("text")
.data(force.nodes())
.enter()
.append("text")
.attr("x", 8)
.attr("y", ".31em")
.attr("source", function(d){ return d.name; })
.style("font-size", function(d){ return (d.ins * 0.5 + 8 || 8) + "px"; })
.text(function(d) { return d.label || d.name; });
// legend
var legendHeight = 20;
var legendGap = 5;
var legendTextHeight = 10;
var legend = svg.append("g")
.attr("class", "legend");
// legend blocks
legend.selectAll("rect")
.data(orgArray)
.enter()
.append("rect")
.attr("x", 0)
.attr("y", function(d, i){ return (legendGap + legendHeight) * i; })
.attr("width", 100)
.attr("height", legendHeight)
.attr("org", function(d) { return d.org; })
.style("fill", function(d, i) { return colorize(d.org); })
.on('mouseover', function(d, i) { transitionIn(d.org); })
.on('mouseout', function(d, i) { transitionOut(); });
// legend labels
legend.selectAll("text")
.data(orgArray)
.enter()
.append("text")
.attr("x", 5)
.attr("y", function(d, i){ return (legendHeight / 2) + 3 + (legendGap + legendHeight) * i; })
.attr("org", function(d){ return d.org; })
.style("font-size", legendTextHeight + "px")
.style("text-shadow", "none")
.style("font-weight", "bold")
.style("font-color", "white")
.text(function(d) { return d.org; });
// Use elliptical arc path segments to doubly-encode directionality.
function tick() {
path.attr("d", linkArc);
circle.attr("transform", transform);
text.attr("transform", transform);
}
function linkArc(d) {
var dx = d.target.x - d.source.x, dy = d.target.y - d.source.y, dr = Math.sqrt(dx * dx + dy * dy);
return "M" + d.source.x + "," + d.source.y + "A" + dr + "," + dr + " 0 0,1 " + d.target.x + "," + d.target.y;
}
function transform(d) {
return "translate(" + d.x + "," + d.y + ")";
}
function redraw() {
chart.attr("transform", "translate(" + d3.event.translate + ") scale(" + d3.event.scale + ")");
}
function transitionIn(org) {
d3.select(".legend rect[org='" + org + "']")
.classed("hover", true)
.transition()
.duration(TRANSITION_DURATION)
.style("fill", HIGHLIGHT_COLOR);
d3.selectAll("circle[org='" + org + "']")
.classed("hover", true)
.transition()
.duration(TRANSITION_DURATION)
.attr("r", 30)
.style("stroke-width", "1")
.style("stroke", HIGHLIGHT_COLOR);
}
function transitionOut() {
d3.selectAll(".legend rect")
.classed("hover", false)
.transition()
.duration(TRANSITION_DURATION)
.style("fill", function (d, i) { return colorize(d.org); });
d3.selectAll("circle")
.classed("hover", false)
.transition()
.duration(TRANSITION_DURATION)
.attr("r", function(d){ return d.ins * 0.5 + 4 || 4; })
.style("stroke-width", 0)
.style("stroke", DEFAULT_STROKE);
}
function showPaths(x) {
resetGraph();
// mark this node as selected
d3.selectAll("circle[source='" + x + "']")
.classed("selected", true)
.classed("lit", true)
.style("fill", HIGHLIGHT_COLOR)
.style("opacity", "1");
showDependencies(x);
showDependenciesOn(x);
killEverythingElse();
// re-light the markers ...
d3.selectAll("path.marker")
.style("opacity", 1);
}
function killEverythingElse() {
// kill the paths
d3.selectAll("path:not(.lit)")
.style("stroke", DEFAULT_STROKE)
.style("opacity", "0.25")
.style("marker-end", "url(#normal)");
// kill the circles
d3.selectAll("circle:not(.lit)")
.classed("selected", false)
.style("opacity", "0.25")
.style("fill", function(d, i){ colorize(d.org); });
// kill the texts
d3.selectAll("text:not(.lit)")
.classed("selected", false)
.style("opacity", "0.25");
// kill the legend
d3.selectAll(".legend rect:not(.lit), .legend text:not(.lit)")
.transition()
.duration(TRANSITION_DURATION)
.style("opacity", "0.25");
}
function showDependencies(source) {
d3.selectAll("circle[source='" + source + "']:not(.selected)")
.classed("lit", true)
.transition()
.duration(TRANSITION_DURATION)
.style("fill", OUT_COLOR)
.style("opacity", "1");
d3.selectAll("text[source='" + source + "']")
.classed("lit", true)
.transition()
.duration(TRANSITION_DURATION)
.style("opacity", "1");
d3.selectAll("path[source='" + source + "']")
.classed("lit", true)
.transition()
.duration(TRANSITION_DURATION)
.style("marker-end", "url(#out)")
.style("stroke", OUT_COLOR)
.style("opacity", "1")
.call(showDependenciesForPath);
}
function showDependenciesForPath(path) {
if (path != null) {
path.each(function(p) {
lightUpLegendFor(p.source.org);
lightUpLegendFor(p.target.org);
showDependencies(p.target.name);
});
}
}
function showDependenciesOn(target) {
d3.selectAll("path[target='" + target + "']")
.classed("lit", true)
.transition()
.duration(TRANSITION_DURATION)
.style("marker-end", "url(#in)")
.style("stroke", IN_COLOR)
.style("opacity", 1)
.call(showTargetNodesForPath);
}
function showTargetNodesForPath(path) {
if (path != null) {
path.each(function(p) {
d3.selectAll("circle[source='" + p.source.name + "']")
.classed("lit", true)
.transition()
.duration(TRANSITION_DURATION)
.style("fill", IN_COLOR)
.style("opacity", "1");
d3.selectAll("text[source='" + p.source.name + "']")
.classed("lit", true)
.transition()
.duration(TRANSITION_DURATION)
.style("opacity", "1");
lightUpLegendFor(p.source.org);
lightUpLegendFor(p.target.org);
});
}
}
function lightUpLegendFor(org) {
d3.selectAll("rect[org='" + org + "'], text[org='" + org + "']")
.classed("lit", true)
.transition()
.duration(TRANSITION_DURATION)
.style("opacity", "1");
}
function resetGraph(){
d3.selectAll("rect, circle, path, text")
.classed("lit", false)
.classed("selected", false)
// .transition()
// .duration(TRANSITION_DURATION)
.style("opacity", 1);
d3.selectAll("path")
.style("stroke", DEFAULT_STROKE)
.style("marker-end", "url(#normal)");
d3.selectAll("circle")
.style("fill", function(d, i){ return colorize(d.org); })
}
</script>
</body>
Raw
parseModules.groovy
import groovy.json.*
// prepare ourselves for ssl errors
System.setProperty("jsse.enableSNIExtension", "false");
def slurper = new JsonSlurper()
data = slurper.parseText(new File("github-modules.json").text).items
out = []
def plethora = [:]
println "github ..."
data.each{
baseurl = "https://raw.githubusercontent.com/" + [it.full_name, it.master_branch].join("/")
pomurl = baseurl + "/pom.xml"
configurl = baseurl + "/omod/src/main/resources/config.xml"
anturl = baseurl + "/metadata/config.xml"
pom = null
config = null
// first, try to get maven-based files
try {
pom = new XmlSlurper().parseText(pomurl.toURL().text)
config = new XmlSlurper().parseText(configurl.toURL().text)
} catch(e) {
print "not a maven project ... "
// now, try to get ant-based files
try {
config = new XmlSlurper().parseText(anturl.toURL().text)
println "success!"
} catch(x) {
println "couldn't do it ... " + it.full_name
}
}
if (config) {
id = pom ? "${pom.artifactId}" : "${config.id}"
name = pom ? "${pom.name}" : "${config.name}"
module = [ artifact: id, name: name, org: "${it.owner.login}", forks: it.forks_count ]
module.required = config.require_modules.children().collect({
it.text().replaceAll("org.openmrs.module.", "").trim().replaceAll("\n", "").replaceAll("\t", "")
})
if (plethora[module.artifact] == null || plethora[module.artifact].forks < module.forks) {
plethora[module.artifact] = module
}
}
}
// and now for the subversion repositories ...
println "subversion ... "
svnrepos = ["abandoned", "amrspharmacy", "amrsreporttools", "archetypes", "atd", "atomfeed", "backports14x", "basicmodule", "billing", "bloodbank", "cardiologyreporting", "chica", "chicaops", "childvctreport", "chirdlutil", "chirdlutilbackports", "chwdashboard", "cleaningvoided", "clinicalsummary", "cohortcreation", "cohortreports", "comparelists", "conceptimportexport", "conceptproposal", "databasebackup", "databasemessages", "datadeletion", "dataentrystatistics", "dataqualitytools", "datasetbuilder", "dduipd", "ddupatientdashboard", "ddupatientqueue", "ddurks", "devexamples", "dhisconnector", "diabetesmanagement", "doonoutpatient", "doonpatientsummary", "doubleentryreconciliation", "draftforms", "drugrequirements", "dss", "encounterattribute", "epihandy", "exceldataimport", "exportccd", "exporttocsvexample", "ezvacimmunization", "flashmediaviewer", "flowsheet", "foodprogram", "form2program", "formcompletion", "formdataexport", "formimportexport", "frontlinesmsmedic", "globalpropertyeditor", "gmapsimageviewer", "groovyforms", "growthchart", "helloworld", "hivtreamentfailure", "hospitalcore", "hr", "htmlformentrydesigner", "i2b2export", "idcards", "idgenws", "imageimport", "inpatientcare", "inventory", "jasperreport", "jsslab", "kettle", "labentry", "labsconnector", "ldap", "logic", "logicws", "longitudinaldataviewer", "mailscheduler", "mdrtb", "mdrtbpatientchartwidgets", "medicalproblem", "mentalhealth", "metadata", "mflgenerator", "mirthadmin", "mirthmessaging", "mrngen", "msf", "namibiadefense", "nbs", "ncd", "nealreporting", "nutrition", "obsgroupexport", "obstostate", "occmodule", "odamocklogicws", "openempi", "orderentry", "patientchartwidgets", "patientdatatransfer", "patientimage", "patientlookup", "patientnotes", "patientsearchbycohortdef", "patientsearchformlinks", "patientvisitscheduler", "pearlgrlz", "personportrait", "perufitnessstudy", "pharmacydataexport", "pihconsultsheet", "pihhacks", "pihhaiti", "pihlesothotbupload", "piht1000patientdataexport", "pixpdq", "portletlibrary", "printing", "programoverview", "quickstats", "radiology", "randomization", "raxa-jss", "regadbintegration", "regimen", "regimenpickup", "regimenreporting", "register", "registration", "releasetestinghelper", "remarks", "reminders", "remotedatatransfer", "remoteregistration", "reporttemplate", "requestaccount", "researchdataexport", "researchencounters", "restrictbyrole", "restrictencounterbyrole", "rgccd", "rgrta", "rolebasedhomepage", "rwandaprimarycare", "schedulerquartz", "search", "searchkeylogging", "sharemetadata", "simpledispensing", "simplefinance", "simplepharmacy", "siteolympics", "smartcontainer", "smsserver", "sockethl7listener", "specimentracking", "spreadsheetupload", "stat", "stateprocessing", "syncsds", "tbla", "touchscreen", "tracnetreport", "tracplus", "tsb", "ui.springmvc", "versionedfileupload", "visitmanagement", "visitregister", "visitscheduler", "whomod", "xformsdesigner", "xformsorbeon"];
svnrepos.each {
baseurl = "https://svn.openmrs.org/openmrs-modules/" + it
hastrunk = false
try {
ack = (baseurl + "/trunk/").toURL().text
hastrunk = true
} catch(x) {
// pass
}
if (hastrunk) {
baseurl += "/trunk"
}
pomurl = baseurl + "/pom.xml"
configurl = baseurl + "/omod/src/main/resources/config.xml"
anturl = baseurl + "/metadata/config.xml"
pom = null
config = null
try {
pom = new XmlSlurper().parseText(pomurl.toURL().text)
config = new XmlSlurper().parseText(configurl.toURL().text)
} catch(e) {
print "not a maven project ... "
// now, try to get ant-based files
try {
config = new XmlSlurper().parseText(anturl.toURL().text)
println "success!"
} catch(x) {
println "couldn't do it ... " + it
}
}
if (config) {
id = pom ? "${pom.artifactId}" : "${config.id}"
name = pom ? "${pom.name}" : "${config.name}"
module = [ artifact: id, name: name, org: "openmrs", forks: 999 ]
module.required = config.require_modules.children().collect({
it.text().replaceAll("org.openmrs.module.", "").trim().replaceAll("\n", "").replaceAll("\t", "")
})
if (plethora[module.artifact] == null || plethora[module.artifact].forks < module.forks) {
plethora[module.artifact] = module
}
}
}
plethora.each {
module, props ->
props.required.each {
requiredModule ->
rm = plethora.get(requiredModule)
targetOrg = rm ? rm.org : "Not Found"
out.add([ source: "${props.artifact}", label: "${props.name}", target: "${requiredModule}", org: "${props.org}", targetOrg: "${targetOrg}" ])
}
}
new File("vizdata.json").write(new JsonBuilder(out).toString())
Raw
scrapeSVNHomepage.js
out = [];
$("div .module").each(function(){
if ($(this).find("a.migrated").length == 0) {
out.push($(this).find("a").attr("href"));
}
});
$("body").append("div").text(out);
console.log(out);
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