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jmchilton/run_random_lines_bioblend_example.py

Created July 24, 2014 15:59
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Example script that runs Galaxy's random lines tool using bioblend.
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run_random_lines_bioblend_example.py
# Setup Galaxy instance and dataset for testing...
from bioblend import galaxy
gi = galaxy.GalaxyInstance("localhost:8080", "1957431058be3aa3c57ca312f4a05521")
history = gi.histories.create_history(name="TestRandomLines")
dataset_id = gi.tools.paste_content("1\n2\n3", history["id"])['outputs'][0]["id"]
# Prepare tool inputs.
from bioblend.galaxy.tools.inputs import inputs, dataset
random_lines_inputs = inputs().set("num_lines", 1).set("input", dataset(dataset_id))
# Run tool.
tool_outputs = gi.tools.run_tool(history_id=history["id"], tool_id="random_lines1", tool_inputs=random_lines_inputs)
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