Nextflow config for O2 (WIP for nf-core shared config)

o2.conf

params {
    config_profile_description = 'HMS O2 profile.'
    config_profile_contact = 'Jeremy Muhlich'
    config_profile_url = 'https://...'
    singularity_cache_dir = '/n/groups/lsp/mcmicro/singularity'
}

process {
    executor = "slurm"
    queue = { task.time < 12.h ? 'short' : task.time < 5.d ? 'medium' : 'long' }
}

singularity{
    enabled = true
    autoMounts = true
    cacheDir = params.singularity_cache_dir
}

params {
    max_memory = 230.GB
    max_cpus = 32
}