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jnpaulson/grabAG.sh

Created November 15, 2014 23:49
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grab data from the american gut consortium
Raw
grabAG.sh
#!/bin/bash
# grab the biom data
wget https://github.com/biocore/American-Gut/raw/master/data/PGP/PGP_100nt.biom.gz
wget https://github.com/biocore/American-Gut/raw/master/data/HMP/HMPv35_100nt.biom.gz
wget https://github.com/biocore/American-Gut/raw/master/data/GG/GG_100nt.biom.gz
wget https://github.com/biocore/American-Gut/raw/master/data/AG/AG_100nt.biom.gz
gunzip *
# grab the phenodata
wget https://github.com/biocore/American-Gut/raw/master/data/PGP/PGP_100nt.txt
wget https://github.com/biocore/American-Gut/raw/master/data/HMP/HMPv35_100nt.txt
wget https://github.com/biocore/American-Gut/raw/master/data/GG/GG_100nt.txt
wget https://raw.githubusercontent.com/biocore/American-Gut/master/data/AG/AG_100nt.txt
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