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dplyr::mutate with lubridate::ymd_hms seems to crash R at random
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# Posted on StackOverflow: http://stackoverflow.com/questions/31010713/combining-dplyrmutate-with-lubridateymd-hms-in-r-randomly-causes-segfault | |
#!/usr/bin/env R | |
# -*- encoding:utf-8 -*- | |
require(lubridate) | |
require(dplyr) | |
set.seed(42) | |
make_some_random_datetimes = function(n) ymd("2015-01-01") + seconds(runif(n, min=0, max=60*60*24*365)) | |
d = data.frame( | |
col1 = make_some_random_datetimes(5000), | |
col2 = make_some_random_datetimes(5000) | |
) | |
do_it = function() { | |
d %>% mutate( | |
col1 = ymd_hms(col1), | |
col2 = ymd_hms(col2) # for some reason, it only crashes when evaluating 2+ cols, if we removed this line it'd be fine | |
) | |
return(TRUE) | |
} | |
do_it() # doesn't crash every time...it fails every nth time where n is randomly distributed with mean of roughly 7.7 | |
do_it_lots_of_times = function(n) for (i in 1:n) do_it() | |
do_it_lots_of_times(50) # almost guaranteed to fail on my machine | |
# Running the above line in RStudio, I just get message "R Session Aborted. R encountered a fatal error. The session was terminated." | |
# Running the above line in Terminal, I get following | |
# *** caught segfault *** | |
# address 0x0, cause 'unknown' | |
# Output of sessionInfo() | |
# R version 3.2.1 (2015-06-18) | |
# Platform: x86_64-apple-darwin14.3.0 (64-bit) | |
# Running under: OS X 10.10.3 (Yosemite) | |
# | |
# locale: | |
# [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 | |
# | |
# attached base packages: | |
# [1] stats graphics grDevices utils datasets methods base | |
# | |
# other attached packages: | |
# [1] dplyr_0.4.2 lubridate_1.3.3 | |
# | |
# loaded via a namespace (and not attached): | |
# [1] lazyeval_0.1.10 R6_2.0.1 assertthat_0.1 magrittr_1.5 plyr_1.8.3 parallel_3.2.1 | |
# [7] DBI_0.3.1 tools_3.2.1 memoise_0.2.1 Rcpp_0.11.6 stringi_0.5-2 digest_0.6.8 | |
# [13] stringr_1.0.0 |
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Try this version out in the interim