Minimal debian image with Python 3.6 and geo python tools

docker-compose.yml

version: '3'
services:
  jupyter:
    build: .
    ports:
      - "8888:8888"
    volumes:
      - ./:/notebooks
    command: ["/bin/bash", "-c", "cd /notebooks && jupyter notebook --ip=0.0.0.0 --allow-root"]

Dockerfile

FROM python:3.6-slim-stretch

ADD requirements.txt /tmp/requirements.txt

RUN apt-get update && \
    apt-get install -y \
        build-essential \
        make \
        gcc \
        locales \
        libgdal20 libgdal-dev && \
    python -m pip install numpy cython --no-binary numpy,cython && \
    python -m pip install \
        "rasterio>=1.0a12" fiona shapely \
        --pre --no-binary rasterio,fiona,shapely && \
    python -m pip install -r /tmp/requirements.txt && \
    python -m pip uninstall -y cython && \
    rm -r /root/.cache/pip && \
    apt-get remove -y --purge libgdal-dev make gcc build-essential && \
    apt-get autoremove -y && \
    rm -rf /var/lib/apt/lists/*

RUN dpkg-reconfigure locales && \
    locale-gen C.UTF-8 && \
    /usr/sbin/update-locale LANG=C.UTF-8

ENV LC_ALL C.UTF-8

CMD ["/bin/python"]

requirements.txt

rasterio>=1.0a12
fiona
shapely
pandas
geopandas
pyproj
mapbox
rasterstats
mapboxgl
jupyter
mercantile
scipy
scikit-learn
seaborn
statsmodels
ggplot
scikit-image