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johnsolk/fastq_to_fasta.py

Created June 14, 2017 23:07
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fastq_to_fasta.py
# checks for redundancies in record headers
# converts fastq to fasta format
import screed
f = open('porecamp_killifish.fasta','wb')
for n,r in enumerate(screed.open('porecamp_killifish.fastq')):
if r.name in s:
continue
else:
s.update([r.name])
del r["quality"]
screed.screedRecord.write_fastx(r , f)
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