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johnsolk/MMETSP_diginorm_streaming_v_not.csv

Created July 12, 2016 19:44
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Comparison with transrate of Trinity trascriptome assemblies from 3 MMETSP samples, diginorm streaming vs. not
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MMETSP_diginorm_streaming_v_not.csv
assembly n_seqs smallest largest n_bases p_contigs_with_CRBB p_refs_with_CRBB reference_coverage
SRR1300409.Trinity.streaming.fixed.fasta_no_orphans 30605 224 4134 19238075 0.97543 0.92568 0.85853
SRR1300409.streaming.fixed.fasta 30457 224 4134 19243907 0.98276 0.93851 0.89009
SRR1300409.Trinity.fixed.fasta 30771 224 4210 19279950 0.98096 0.94858 0.89449
SRR1300402.streaming.fixed.fasta 35128 224 13921 22716553 0.9928 0.98108 0.94234
SRR1300402.not.fixed.fasta 35101 224 13528 22584802 0.99282 0.98024 0.93656
SRR1300410.Trinity.streaming.fixed.fasta 9316 224 4094 5055897 0.99141 0.96962 0.93397
SRR1300410.Trinity.fixed.fasta 9414 224 4096 5077982 0.98959 0.97993 0.94012
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