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# load modules | |
module load GNU/4.8.3 anaconda parallel | |
module unload python | |
# setup conda env | |
conda create --name sourmash_nov2017 python=3.5 | |
# use this to activate env: | |
source activate sourmash_nov2017 | |
# follow instructions: | |
# http://sourmash.readthedocs.io/en/latest/tutorials.html | |
pip install -U Cython | |
pip install -U jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer | |
pip install -U https://github.com/dib-lab/sourmash/archive/master.zip | |
# should be able to type `sourmash compute` and get output |
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These are the steps to run sourmash when logging to msu hpcc each time: