oysterriver_readnums

[ljcohen@dev-intel14 trim]$ for i in $(find /mnt/scratch/ljcohen/oysterriver/ -name "*left.fq"); do echo $i; done
/mnt/scratch/ljcohen/oysterriver/ERR1674585/trinity/ERR1674585.left.fq
/mnt/scratch/ljcohen/oysterriver/ERR489297/trinity/ERR489297.left.fq
/mnt/scratch/ljcohen/oysterriver/DRR036858/trinity/DRR036858.left.fq
/mnt/scratch/ljcohen/oysterriver/DRR069093/trinity/DRR069093.left.fq
/mnt/scratch/ljcohen/oysterriver/DRR053698/trinity/DRR053698.left.fq
/mnt/scratch/ljcohen/oysterriver/DRR031870/trinity/DRR031870.left.fq
/mnt/scratch/ljcohen/oysterriver/SRR2016923/trinity/SRR2016923.left.fq
/mnt/scratch/ljcohen/oysterriver/ERR058009/trinity/ERR058009.left.fq
/mnt/scratch/ljcohen/oysterriver/SRR2086412/trinity/SRR2086412.left.fq
/mnt/scratch/ljcohen/oysterriver/SRR1789336/trinity/SRR1789336.left.fq
/mnt/scratch/ljcohen/oysterriver/SRR3499127/trinity/SRR3499127.left.fq
/mnt/scratch/ljcohen/oysterriver/DRR046632/trinity/DRR046632.left.fq
/mnt/scratch/ljcohen/oysterriver/DRR030368/trinity/DRR030368.left.fq
/mnt/scratch/ljcohen/oysterriver/DRR082659/trinity/DRR082659.left.fq
/mnt/scratch/ljcohen/oysterriver/ERR1016675/trinity/ERR1016675.left.fq
# after diginorm
[ljcohen@dev-intel14 MMETSP]$ for i in $(find /mnt/scratch/ljcohen/oysterriver/ -name "*left*"); do grep -c "^@" $i; done
9456699
20111277
20522786
10590588
11894231
6810436
27422938
3635589
10639307
10162851
8298264
13193779
9392526
15612701
7668599
[ljcohen@dev-intel14 trim]$ for i in $(find /mnt/scratch/ljcohen/oysterriver/ -name "*_1.fastq"); do echo $i; done
/mnt/scratch/ljcohen/oysterriver/ERR1674585/ERR1674585_1.fastq
/mnt/scratch/ljcohen/oysterriver/ERR489297/ERR489297_1.fastq
/mnt/scratch/ljcohen/oysterriver/DRR036858/DRR036858_1.fastq
/mnt/scratch/ljcohen/oysterriver/DRR069093/DRR069093_1.fastq
/mnt/scratch/ljcohen/oysterriver/DRR053698/DRR053698_1.fastq
/mnt/scratch/ljcohen/oysterriver/DRR031870/DRR031870_1.fastq
/mnt/scratch/ljcohen/oysterriver/SRR2016923/SRR2016923_1.fastq
/mnt/scratch/ljcohen/oysterriver/ERR058009/ERR058009_1.fastq
/mnt/scratch/ljcohen/oysterriver/SRR2086412/SRR2086412_1.fastq
/mnt/scratch/ljcohen/oysterriver/SRR1789336/SRR1789336_1.fastq
/mnt/scratch/ljcohen/oysterriver/SRR3499127/SRR3499127_1.fastq
/mnt/scratch/ljcohen/oysterriver/DRR046632/DRR046632_1.fastq
/mnt/scratch/ljcohen/oysterriver/DRR030368/DRR030368_1.fastq
/mnt/scratch/ljcohen/oysterriver/DRR082659/DRR082659_1.fastq
/mnt/scratch/ljcohen/oysterriver/ERR1016675/ERR1016675_1.fastq
# raw
[ljcohen@dev-intel14 oysterriver]$ for i in $(find /mnt/scratch/ljcohen/oysterriver/ -name "*_1.fastq"); do grep -c "^@" $i; done
23332734
263828489
143405495
123509221
125686029
60477789
106407400
68774884
72937311
40464466
30064608
81755202
88604874
69319009
66609460
[ljcohen@dev-intel14 trim]$ for i in $(find /mnt/scratch/ljcohen/oysterriver/ -name "*_1P.fq"); do echo $i; grep -c "^@" $i; done
/mnt/scratch/ljcohen/oysterriver/ERR1674585/trim/ERR1674585.trim_1P.fq
20005655
/mnt/scratch/ljcohen/oysterriver/ERR489297/trim/ERR489297.trim_1P.fq
261590007
/mnt/scratch/ljcohen/oysterriver/DRR036858/trim/DRR036858.trim_1P.fq
138566189
/mnt/scratch/ljcohen/oysterriver/DRR069093/trim/DRR069093.trim_1P.fq
122763989
/mnt/scratch/ljcohen/oysterriver/DRR053698/trim/DRR053698.trim_1P.fq
125323724
/mnt/scratch/ljcohen/oysterriver/DRR031870/trim/DRR031870.trim_1P.fq
57101097
/mnt/scratch/ljcohen/oysterriver/SRR2016923/trim/SRR2016923.trim_1P.fq
101116910
/mnt/scratch/ljcohen/oysterriver/ERR058009/trim/ERR058009.trim_1P.fq
68338346
/mnt/scratch/ljcohen/oysterriver/SRR2086412/trim/SRR2086412.trim_1P.fq
70748602
/mnt/scratch/ljcohen/oysterriver/SRR1789336/trim/SRR1789336.trim_1P.fq
38090430
/mnt/scratch/ljcohen/oysterriver/SRR3499127/trim/SRR3499127.trim_1P.fq
30015565
/mnt/scratch/ljcohen/oysterriver/DRR046632/trim/DRR046632.trim_1P.fq
79530985
/mnt/scratch/ljcohen/oysterriver/DRR030368/trim/DRR030368.trim_1P.fq
85136450
/mnt/scratch/ljcohen/oysterriver/DRR082659/trim/DRR082659.trim_1P.fq
69311914
/mnt/scratch/ljcohen/oysterriver/ERR1016675/trim/ERR1016675.trim_1P.fq
65604540