Joke Durnez jokedurnez
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jokedurnez
/ Attention_summary.ipynb
Created
September 18, 2018 19:22
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jokedurnez
/ Physio_summary.ipynb
Last active
September 18, 2018 19:32
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jokedurnez
/ Physio_preprocess.ipynb
Created
September 18, 2018 19:19
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jokedurnez
/ Link factors to connectivity patterns.ipynb
Created
October 31, 2017 19:59
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jokedurnez
/ psychosis_FA.html
Created
October 31, 2017 19:59
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| <!DOCTYPE html> | |
| <html> | |
| <head><meta charset="utf-8" /> | |
| <title>Link factors to connectivity patterns</title> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script> | |
| <style type="text/css"> | |
| /*! |
jokedurnez
/ infomap_from_correlation.py
Last active
March 13, 2017 17:27
This piece of code applies infomap to a correlation matrix as in Gordon, Cerebral Cortex, 2016. 'labels' should be a pandas dataframe with columns 'x','y' and 'z' with their locations in mni-space and mm.
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| import sys | |
| import os | |
| sys.path.append(os.path.join(os.environ.get('SOFTWAREDIR'),'infomap/examples/python/')) | |
| from infomap import infomap | |
| import pandas as pd | |
| import numpy as np | |
| from collections import Counter | |
| def infomap_correlation(correlation,labels): |