14524-252-0-6-interrupted-no-domain-decomposition.log

Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Starting
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Removing old file '/var/lib/fah/work/00/logfile_01-20200315-031613.txt'
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Running FahCore: /opt/fah/FAHCoreWrapper /var/lib/fah/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 173424 -checkpoint 15 -np 10
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Started FahCore on PID 175049
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:Core PID:175053
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:FahCore 0xa7 started
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:*********************** Log Started 2020-03-16T12:41:31Z ***********************
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Type: 0xa7
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Core: Gromacs
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Args: -dir 00 -suffix 01 -version 705 -lifeline 175049 -checkpoint 15 -np
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:             10
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************************ CBang *************************************
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Date: Nov 5 2019
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Time: 06:06:57
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:     Branch: master
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:   Compiler: GNU 8.3.0
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Bits: 64
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Mode: Release
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************************ System ************************************
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 158 Stepping 10
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       CPUs: 12
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:     Memory: 31.30GiB
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Free Memory: 21.47GiB
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:    Threads: POSIX_THREADS
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: OS Version: 5.5
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Has Battery: false
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: On Battery: false
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7: UTC Offset: -3
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:        PID: 175053
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:        CWD: /var/lib/fah/work
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:******************************** Build - libFAH ********************************
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:    Version: 0.0.18
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:  Copyright: 2019 foldingathome.org
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:   Homepage: https://foldingathome.org/
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Date: Nov 5 2019
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Time: 06:13:26
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:     Branch: master
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:   Compiler: GNU 8.3.0
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Bits: 64
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       Mode: Release
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:************************************ Build *************************************
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:       SIMD: avx_256
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:********************************************************************************
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Project: 14524 (Run 252, Clone 0, Gen 6)
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Unit: 0x0000000880fccb0a5e459bb041761086
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Reading tar file core.xml
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Reading tar file frame6.tpr
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Digital signatures verified
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Calling: mdrun -s frame6.tpr -o frame6.trr -x frame6.xtc -cpt 15 -nt 10
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:Steps: first=1500000 total=250000
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Fatal error:
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
Mar 16 09:41:31 calvin FAHClient[173424]: 12:41:31:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:WARNING:Unexpected exit() call
Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:WARNING:Unexpected exit from science code
Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:Saving result file ../logfile_01.txt
Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:Saving result file md.log
Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:0xa7:Saving result file science.log
Mar 16 09:41:36 calvin FAHClient[173424]: 12:41:36:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)