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Last active January 6, 2020 20:23
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applying the stick of correction to fastsimcoal
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fsc26.md

R error for P2C2M SNAPP:

dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
  Referenced from: /Users/jonchang/Downloads/Tutorial/example_mode1/./fsc26
  Reason: image not found

fsc26 is looking for GCC in the wrong place

Run mdfind to figure out where GCC actually is. It can't find libgomp.1.dylib so search for:

% mdfind -name libgomp.1.dylib
    /usr/local/lib/gcc/9/libgomp.1.dylib

Then use install_name_tool to teach fsc26 where libgomp.1.dylib lives

% install_name_tool -change /usr/local/lib/libgomp.1.dylib   /usr/local/lib/gcc/9/libgomp.1.dylib    fsc26

Repeat as necessary for the other errors

% install_name_tool -change /usr/local/lib/libstdc++.6.dylib /usr/local/lib/gcc/9/libstdc++.6.dylib  fsc26
% install_name_tool -change /usr/local/lib/libgcc_s.1.dylib  /usr/local/lib/gcc/9/libgcc_s.1.dylib   fsc26
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