joowkim/read_count.sh

## read_count.sh
# /usr/bin/bash

Line=0
for item in *.gz
	do	Line=`zcat $item | wc -l`
		echo $item $((Line/4))
	done

####### wrapper shell file ######
bash ReadCountFQ.sh > read.log
echo
echo $"FileName"	"ReadCount"
cat read.log | sort -k 2 -r
	# /usr/bin/bash

	Line=0
	for item in *.gz
	do Line=`zcat $item \| wc -l`
	echo $item $((Line/4))
	done

	####### wrapper shell file ######
	bash ReadCountFQ.sh > read.log
	echo
	echo $"FileName" "ReadCount"
	cat read.log \| sort -k 2 -r