I hereby claim:
- I am jordeu on github.
- I am jordeu (https://keybase.io/jordeu) on keybase.
- I have a public key ASATLDRxQkvD0KWwf7C9cQtYN2kNsXwrVEEw1vSK3HfEKgo
To claim this, I am signing this object:
Jordi Deu-Pons jordeu
jordeu
/ rnaseq_samplesheet_test_v3.4.csv
Created
September 2, 2022 15:16
nf-core rnaseq test samplesheet using HTTPS
We can make this file beautiful and searchable if this error is corrected: It looks like row 6 should actually have 4 columns, instead of 2. in line 5.
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| sample,fastq_1,fastq_2,strandedness | |
| WT_REP1,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/SRR6357070_1.fastq.gz,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/SRR6357070_2.fastq.gz,reverse | |
| WT_REP1,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/SRR6357071_1.fastq.gz,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/SRR6357071_2.fastq.gz,reverse | |
| WT_REP2,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/SRR6357072_1.fastq.gz,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/SRR6357072_2.fastq.gz,reverse | |
| RAP1_UNINDUCED_REP1,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/SRR6357073_1.fastq.gz,,reverse | |
| RAP1_UNINDUCED_REP2,https://nf-core-awsmegatests.s3.eu-west-1.amazonaws.com/rnaseq/input_data/minimal/GSE110004/S |
jordeu
/ h38_wgs_scattered_calling_intervals.txt
Created
August 5, 2022 11:19
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| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0001_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0002_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0003_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0004_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0005_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0006_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0007_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0008_of_50/scattered.interval_list | |
| s3://fusionfs/gatk4-germline-snps-indels-nf/scattered_calling_intervals/temp_0010_of_50/scattered.interval_list | |
| s3://fusionfs/ga |
jordeu
/ manifest-6samples-fusionfs-seqera.tsv
Created
August 5, 2022 08:07
We can make this file beautiful and searchable if this error is corrected: It looks like row 4 should actually have 9 columns, instead of 6. in line 3.
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| NA19651-A NA19651 s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR047732_1.filt.fastq.gz s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR047732_2.filt.fastq.gz Solexa-26415 BI.PE.100506_SL-XCQ_0002_FC61GU6AAXX.3 2010-01-05 illumina BI | |
| NA19652-A NA19652 s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR047740_1.filt.fastq.gz s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR047740_2.filt.fastq.gz Solexa-26420 BI.PE.100506_SL-XCQ_0002_FC61GU6AAXX.5 2010-01-05 illumina BI | |
| NA19654-A NA19654 s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR043340_1.filt.fastq.gz s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR043340_2.filt.fastq.gz Solexa-26413 BI.PE.100430_SL-XCW_0002_FC61EGDAAXX.6 2010-01-05 illumina BI | |
| NA19655-A NA19655 s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR043336_1.filt.fastq.gz s3://fusionfs/gatk4-germline-snps-indels-nf/sequence_reads/SRR043336_2.filt.fastq.gz Solexa-26409 BI.PE.100430_SL-XCW_0002_FC61EGDAA |
jordeu
/ haar.ipynb
Created
May 12, 2020 13:38
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| import pandas as pd | |
| import plotly.express as px | |
| scores = [ | |
| [(325,297,322), (318,341,9), (264,8,3), (3,8,3)], | |
| [(268,194,283), (254,292,9), (270,6,3), (4,9,3)], | |
| [(3,6,3), (5,7,326), (7,275,335), (344,274,308)], | |
| [(2,3,3), (3,4,290), (5,305,334), (347,301,359)] | |
| ] |
jordeu
/ screen_history.sh
Created
January 16, 2019 09:51
bashrc script to keep screen history separated and identified by name
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| if [ ! -z $STY ]; then | |
| HISNAME=(${STY//./ }) | |
| HISNAME=${HISNAME[1]} | |
| export HISTSIZE=5000 | |
| export HISTFILESIZE= | |
| PROMPT_COMMAND="history -a; history -c; history -r; ${PROMPT_COMMAND}" | |
| if [ "${WINDOW}" -eq "0" ]; then | |
| HISWIN="" |
jordeu
/ keybase.md
Created
January 3, 2019 10:07
- VirtualBox image: https://bbgcloud.irbbarcelona.org/s/RgGzg9Cn6CT5fXY
- Workshop reference: http://swcarpentry.github.io/git-novice/
- Gitignore Templates: https://github.com/github/gitignore
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| Sample1 | Name | |
|---|---|---|
| ABC0001 | Wild | |
| ABC0002 | Wild | |
| ABC0003 | Mutant |
jordeu
/ pandas perfomance.ipynb
Created
August 14, 2015 14:51
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