GEO series, platform, & sample files

gistfile1.txt

# GEO DATA FROM GSExxxx ID
----------------------------
^SERIES = GSE65633
!Series_title = RNA-seq analysis of neonatal mouse cochlear hair cells
!Series_geo_accession = GSE65633
!Series_pubmed_id = 25855195
!Series_summary = This study examined transcripts that are enriched in neonatal mouse cochlear hair cells. Hair cells were purified by FACS sorting for GFP fluorescence from the cochleas of transgenic mice in which the endogenous Atoh1 gene was fused with GFP
!Series_overall_design = Two replicates of GFP+ hair cells were compared with all other cochlear cell types that were GFP-
!Series_type = Expression profiling by high throughput sequencing
!Series_contributor = Andrew,K,Groves
!Series_sample_id = GSM1602228
!Series_sample_id = GSM1602229
!Series_sample_id = GSM1602230
!Series_sample_id = GSM1602231
!Series_platform_id = GPL13112
!Series_sample_taxid = 10090
# all relation ID and sources should be stored so we can show links out
!Series_relation = BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA274564
!Series_relation = SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP053189

# GEO DATA FROM GSMxxxx ID
--------------------------
^SAMPLE = GSM665476
!Sample_title = F1 E17.5 Brain RNA-seq Cross 1 (BxC)
!Sample_geo_accession = GSM665476
!Sample_source_name_ch1 = Whole Brain

# I'm not sure about this one - what is the _ch1 suffix?
!Sample_characteristics_ch1 = strain: Hybrid: F1 from C57BL/6J mother x CastEi/J father
!Sample_characteristics_ch1 = age: E17.5
!Sample_treatment_protocol_ch1 = Samples were snap chilled with liquid nitrogen immediately after dissection
!Sample_growth_protocol_ch1 = Breeding pairs were fed ad libitum on standard chow
!Sample_molecule_ch1 = total RNA

!Sample_description = Dynabead mRNA Extraction following total RNA extraction with Trizol
!Sample_barcode = none
!Sample_instrument_model = Illumina HiSeq 2000
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq