The "bootstrap-modal.js" includes a fix for the modal pull request https://github.com/twitter/bootstrap/pull/6793. However, that was a fix for the code as it was 3 months ago. The "modal.js" file includes the same code, but is adapted for the latest 3.0.0-wip (5/20/13).

bootstrap-modal.js

/* =========================================================
 * bootstrap-modal.js v3.0.0
 * http://twitter.github.com/bootstrap/javascript.html#modals
 * =========================================================
 * Copyright 2012 Twitter, Inc.
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 * ========================================================= */


!function ($) {

  "use strict"; // jshint ;_;


 /* MODAL CLASS DEFINITION
  * ====================== */

  var Modal = function (element, options) {
    this.options = options
    this.$element = $(element)
      .delegate('[data-dismiss="modal"]', 'click.dismiss.modal', $.proxy(this.hide, this))
    this.options.remote && this.$element.find('.modal-body').load(this.options.remote)
  }

  Modal.prototype = {

      constructor: Modal

    , toggle: function () {
        if (this.options.refresh) {
            return this.refresh()
        } else {
            return this[!this.isShown ? 'show' : 'hide']()
        }
      }

    , show: function () {
        var that = this
          , e = $.Event('show')

        this.$element.trigger(e)

        if (this.isShown || e.isDefaultPrevented()) return

        this.isShown = true

        this.escape()

        this.backdrop(function () {
          var transition = $.support.transition && that.$element.hasClass('fade')

          if (!that.$element.parent().length) {
            that.$element.appendTo(document.body) //don't move modals dom position
          }

          that.$element.show()

          if (transition) {
            that.$element[0].offsetWidth // force reflow
          }

          that.$element
            .addClass('in')
            .attr('aria-hidden', false)

          that.enforceFocus()

          transition ?
            that.$element.one($.support.transition.end, function () { that.$element.focus().trigger('shown') }) :
            that.$element.focus().trigger('shown')

        })
      }

    , refresh: function (options) {
        var that = this
          , e = $.Event('refresh')

        this.$element.trigger(e)

        if (e.isDefaultPrevented()) return

        this.options = $.extend({}, this.options, options)
        this.options.remote && this.$element.find('.modal-body').load(this.options.remote, function () { that.$element.focus().trigger('refreshed') })

        if (this.isShown) return

        if (this.options.show) this.show()
      }

    , hide: function (e) {
        e && e.preventDefault()

        var that = this

        e = $.Event('hide')

        this.$element.trigger(e)

        if (!this.isShown || e.isDefaultPrevented()) return

        this.isShown = false

        this.escape()

        $(document).off('focusin.modal')

        this.$element
          .removeClass('in')
          .attr('aria-hidden', true)

        $.support.transition && this.$element.hasClass('fade') ?
          this.hideWithTransition() :
          this.hideModal()
      }

    , enforceFocus: function () {
        var that = this
        $(document).on('focusin.modal', function (e) {
          if (that.$element[0] !== e.target && !that.$element.has(e.target).length) {
            that.$element.focus()
          }
        })
      }

    , escape: function () {
        var that = this
        if (this.isShown && this.options.keyboard) {
          this.$element.on('keyup.dismiss.modal', function ( e ) {
            e.which == 27 && that.hide()
          })
        } else if (!this.isShown) {
          this.$element.off('keyup.dismiss.modal')
        }
      }

    , hideWithTransition: function () {
        var that = this
          , timeout = setTimeout(function () {
              that.$element.off($.support.transition.end)
              that.hideModal()
            }, 500)

        this.$element.one($.support.transition.end, function () {
          clearTimeout(timeout)
          that.hideModal()
        })
      }

    , hideModal: function (that) {
        this.$element
          .hide()
          .trigger('hidden')

        this.backdrop()
      }

    , removeBackdrop: function () {
        this.$backdrop.remove()
        this.$backdrop = null
      }

    , backdrop: function (callback) {
        var that = this
          , animate = this.$element.hasClass('fade') ? 'fade' : ''

        if (this.isShown && this.options.backdrop) {
          var doAnimate = $.support.transition && animate

          this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />')
            .appendTo(document.body)

          this.$backdrop.click(
            this.options.backdrop == 'static' ?
              $.proxy(this.$element[0].focus, this.$element[0])
            : $.proxy(this.hide, this)
          )

          if (doAnimate) this.$backdrop[0].offsetWidth // force reflow

          this.$backdrop.addClass('in')

          doAnimate ?
            this.$backdrop.one($.support.transition.end, callback) :
            callback()

        } else if (!this.isShown && this.$backdrop) {
          this.$backdrop.removeClass('in')

          $.support.transition && this.$element.hasClass('fade')?
            this.$backdrop.one($.support.transition.end, $.proxy(this.removeBackdrop, this)) :
            this.removeBackdrop()

        } else if (callback) {
          callback()
        }
      }
  }


 /* MODAL PLUGIN DEFINITION
  * ======================= */

  var old = $.fn.modal

  $.fn.modal = function (option) {
    return this.each(function () {
      var $this = $(this)
        , data = $this.data('modal')
        , options = $.extend({}, $.fn.modal.defaults, $this.data(), typeof option == 'object' && option)
      if (!data) $this.data('modal', (data = new Modal(this, options)))
      if (typeof option == 'string') data[option]()
      else if (options.refresh) data.refresh(options)
      else if (options.show) data.show()
    })
  }

  $.fn.modal.defaults = {
      backdrop: true
    , keyboard: true
    , show: true
    , refresh: false
  }

  $.fn.modal.Constructor = Modal


 /* MODAL NO CONFLICT
  * ================= */

  $.fn.modal.noConflict = function () {
    $.fn.modal = old
    return this
  }


 /* MODAL DATA-API
  * ============== */

  $(document).on('click.modal.data-api', '[data-toggle="modal"]', function (e) {
    var $this = $(this)
      , href = $this.attr('href')
      , $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7
      , option = $target.data('modal') ? 'toggle' : $.extend({ remote:!/#/.test(href) && href }, $target.data(), $this.data())

    if ($this.data('refresh') && $target.data('modal')) {
      var o = $target.data('modal');
      o.options.remote = href;
      $target.data('modal', o);
    }

    e.preventDefault()

    $target
      .modal(option)
      .one('hide', function () {
        $this.focus()
      })
  })

}(window.jQuery);

modal.js

/* =========================================================
 * Bootstrap: modal.js v3.0.0
 * http://twitter.github.com/bootstrap/javascript.html#modals
 * =========================================================
 * Copyright 2012 Twitter, Inc.
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 * ========================================================= */


!function ($) { "use strict";

  // MODAL CLASS DEFINITION
  // ======================

  var Modal = function (element, options) {
    this.options   = options
    this.$element  = $(element).delegate('[data-dismiss="modal"]', 'click.dismiss.modal', $.proxy(this.hide, this))
    this.$backdrop =
    this.isShown   = null

    if (this.options.remote) this.$element.find('.modal-body').load(this.options.remote)
  }

  Modal.DEFAULTS = {
      backdrop: true
    , keyboard: true
    , show: true
    , refresh: false
  }

  Modal.prototype.toggle = function () {
    if (this.options.refresh) {
      return this.refresh()
    } else {
      return this[!this.isShown ? 'show' : 'hide']()
    }
  }

  Modal.prototype.show = function () {
    var that = this
    var e    = $.Event('show.bs.modal')

    this.$element.trigger(e)

    if (this.isShown || e.isDefaultPrevented()) return

    this.isShown = true

    this.escape()

    this.backdrop(function () {
      var transition = $.support.transition && that.$element.hasClass('fade')

      if (!that.$element.parent().length) {
        that.$element.appendTo(document.body) //don't move modals dom position
      }

      that.$element.show()

      if (transition) {
        that.$element[0].offsetWidth // force reflow
      }

      that.$element
        .addClass('in')
        .attr('aria-hidden', false)

      that.enforceFocus()

      transition ?
        that.$element.one($.support.transition.end, function () { that.$element.focus().trigger('shown.bs.modal') }) :
        that.$element.focus().trigger('shown.bs.modal')

    })
  }

  Modal.prototype.refresh = function () {
    var that = this
    var e    = $.Event('refresh.bs.modal')

    this.$element.trigger(e)

    if (e.isDefaultPrevented()) return

    if (this.options.remote) this.$element.find('.modal-body').load(this.options.remote, function () { that.$element.trigger('refreshed.bs.modal'); })

    if (this.isShown) return

    if (this.options.show) this.show()
  }

  Modal.prototype.hide = function (e) {
    if (e) e.preventDefault()

    e = $.Event('hide.bs.modal')

    this.$element.trigger(e)

    if (!this.isShown || e.isDefaultPrevented()) return

    this.isShown = false

    this.escape()

    $(document).off('focusin.bs.modal')

    this.$element
      .removeClass('in')
      .attr('aria-hidden', true)

    $.support.transition && this.$element.hasClass('fade') ?
      this.hideWithTransition() :
      this.hideModal()
  }

  Modal.prototype.enforceFocus = function () {
    $(document).on('focusin.bs.modal', function (e) {
      if (this.$element[0] !== e.target && !this.$element.has(e.target).length) {
        this.$element.focus()
      }
    }, this)
  }

  Modal.prototype.escape = function () {
    if (this.isShown && this.options.keyboard) {
      this.$element.on('keyup.dismiss.bs.modal', function ( e ) {
        e.which == 27 && this.hide()
      }, this)
    } else if (!this.isShown) {
      this.$element.off('keyup.dismiss.bs.modal')
    }
  }

  Modal.prototype.hideWithTransition = function () {
    var that    = this
    var timeout = setTimeout(function () {
      that.$element.off($.support.transition.end)
      that.hideModal()
    }, 500)

    this.$element.one($.support.transition.end, function () {
      clearTimeout(timeout)
      that.hideModal()
    })
  }

  Modal.prototype.hideModal = function () {
    var that = this
    this.$element.hide()
    this.backdrop(function () {
      that.removeBackdrop()
      that.$element.trigger('hidden.bs.modal')
    })
  }

  Modal.prototype.removeBackdrop = function () {
    this.$backdrop && this.$backdrop.remove()
    this.$backdrop = null
  }

  Modal.prototype.backdrop = function (callback) {
    var that    = this
    var animate = this.$element.hasClass('fade') ? 'fade' : ''

    if (this.isShown && this.options.backdrop) {
      var doAnimate = $.support.transition && animate

      this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />')
        .appendTo(document.body)

      this.$backdrop.click(
        this.options.backdrop == 'static' ?
          $.proxy(this.$element[0].focus, this.$element[0])
        : $.proxy(this.hide, this)
      )

      if (doAnimate) this.$backdrop[0].offsetWidth // force reflow

      this.$backdrop.addClass('in')

      if (!callback) return

      doAnimate ?
        this.$backdrop.one($.support.transition.end, callback) :
        callback()

    } else if (!this.isShown && this.$backdrop) {
      this.$backdrop.removeClass('in')

      $.support.transition && this.$element.hasClass('fade')?
        this.$backdrop.one($.support.transition.end, callback) :
        callback()

    } else if (callback) {
      callback()
    }
  }


  // MODAL PLUGIN DEFINITION
  // =======================

  var old = $.fn.modal

  $.fn.modal = function (option) {
    return this.each(function () {
      var $this   = $(this)
      var data    = $this.data('bs.modal')
      var options = $.extend({}, Modal.DEFAULTS, $this.data(), typeof option == 'object' && option)

      if (!data) $this.data('bs.modal', (data = new Modal(this, options)))

      if (options.refresh && data) {
        data.options.remote = typeof options.remote == 'string' ? options.remote : false;
        data.options.refresh = true;
        $this.data('bs.modal', data);
      }

      if (typeof option == 'string') data[option]()
      else if (options.refresh) data.refresh()
      else if (options.show) data.show()
    })
  }

  $.fn.modal.Constructor = Modal


  // MODAL NO CONFLICT
  // =================

  $.fn.modal.noConflict = function () {
    $.fn.modal = old
    return this
  }


  // MODAL DATA-API
  // ==============

  $(document).on('click.bs.modal.data-api', '[data-toggle="modal"]', function (e) {
    var $this   = $(this)
    var href    = $this.attr('href')
    var $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7
    var option  = $target.data('modal') ? 'toggle' : $.extend({ remote:!/#/.test(href) && href }, $target.data(), $this.data())

    e.preventDefault()

    if ($this.data('refresh') && $target.data('bs.modal')) {
      var data = $target.data('bs.modal');
      data.options.remote = href;
      data.options.refresh = true;
      $target.data('bs.modal', data);
    }

    $target
      .modal(option)
      .one('hide', function () {
        $this.focus()
      })
    })

    var $body = $(document.body)
      .on('bs.modal.shown',  '.modal', function () { $body.addClass('modal-open') })
      .on('bs.modal.hidden', '.modal', function () { $body.removeClass('modal-open') })

}(window.jQuery);