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josephwb/Makefile.BEAST.likes

Created February 16, 2018 15:51
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Compile and install native BEAST likelihood cores (BEAST v1.8.*). Assumes linux
Raw
Makefile.BEAST.likes
# run from BEASTv1.8.*/native
# will compile and install into ../lib/
CC=gcc
CFLAGS=-O2 -funroll-loops
INCLUDES=-I${JAVA_HOME}/include/ -I${JAVA_HOME}/include/linux
all: libNucleotideLikelihoodCore.so libAminoAcidLikelihoodCore.so
.c.o:
${CC} ${CFLAGS} ${INCLUDES} -c $*.c
libNucleotideLikelihoodCore.so: NucleotideLikelihoodCore.o
${CC} ${CFLAGS} ${INCLUDES} -shared -o libNucleotideLikelihoodCore.so NucleotideLikelihoodCore.o; \
cp libNucleotideLikelihoodCore.so ../lib/.
libAminoAcidLikelihoodCore.so: AminoAcidLikelihoodCore.o
${CC} ${CFLAGS} ${INCLUDES} -shared -o libAminoAcidLikelihoodCore.so AminoAcidLikelihoodCore.o; \
cp libAminoAcidLikelihoodCore.so ../lib/.
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