OMERO to_paths.py

to_path.py

#!/usr/bin/env python

from os.path import exists

import os
import sys
import fileinput

DIST = "/opt/omero/omero/OMERO-CURRENT/lib/python"
DIST = os.environ.get("OMERO_DIST", DIST)

DATA = "/opt/omero-data/OMERO"
DATA = os.environ.get("OMERO_DATA", DATA)

TYPE = "Pixels"
TYPE = os.environ.get("OMERO_TYPE", TYPE)

sys.path.insert(0, DIST)

from omero.util import long_to_path
from path import path

def to_path(pid):
    pathname = long_to_path(long(pid))
    fullpath = "/".join([DATA, TYPE, pathname])
    return path(fullpath)

for line in fileinput.input():
    line = line.strip()
    pid, hash = line.split()
    if len(hash) == 40:
        p = to_path(pid)
        print "%s  %s" % (hash, p)