Register_in_iRODS.py

#!/usr/bin/env python
# -*- coding: utf-8 -*-

import omero.scripts as scripts


client = scripts.client(
    'Register_in_iRODS.py',
    scripts.Long("Image_ID", optional=False),
    scripts.String("Logical_Path", optional=False),
    version="0.1.0",
    contact="ome-users@lists.openmicroscopy.org.uk",
    description="""
Uses python-irodsclient to send a message to an iRODS server.

Assumes NFSRODS

params:
    Image_ID: id of the image which should be sent to iRODS.
    Logical_Path: location in the iRODS zone where the directory should live.
""")


image_id = client.getInput("Image_ID").val
logical_path = client.getInput("Logical_Path").val

query = client.sf.getQueryService()
image_obj = query.getObject("Image", image_id)