jphdotam

# this is inspired by the official ImportDicomFiles.py - however, this is MUCH faster because
# it uses multiple workers to dramatically reduce IO bottlenecks
# it doesn't re-instantiate the Http() and headers for every file, rather every folder

# it does assume the input folders are structured in the orthanc format, e.g. /00/00/0000a8768bd86...
# and expects PATH_TO_SYNC to be something like:
## "/path/to/orthanc/root/*"  for all root folders
## "/path/to/orthanc/root/1*" for all folders beginning with 1
## "/path/to/orthanc/root/23" for root folder 23 only

jphdotam

package main

import (
	"fmt"
	"runtime"
	"sort"
	"sync"
)

var cores = runtime.NumCPU()

jphdotam

package main

import (
	"fmt"
	"runtime"
	"sort"
	"sync"
)

var cores = runtime.NumCPU()

jphdotam

import nimgl/[glfw, opengl]
import shader

type Vertex {.packed.} = object
    color: array[4, GLfloat]
    position: array[3, GLfloat]
proc initVertex(color: array[4, GLfloat], position: array[3, GLfloat]): Vertex = Vertex(color: color, position: position)

var verts: array[4, Vertex] = [
    initVertex([0.11f, 0.8f, 0.76f, 1.0f], [-0.5f, -0.5f, 0.0f]),

jphdotam

import os
import cv2
import glob
import pydicom
from pydicom.dicomdir import DicomDir
from pydicom.errors import InvalidDicomError

## EDIT THESE TWO LINES IF NEEDED:
FOLDER_PATH = "./dicom_study/" # Path to your folder of DICOMS; default assumes they're in a folder called 'dicom_study' in the same folder as this file
BLANK_PROPORTION = 0.05  # Set this to 0.1 to blank out top 10% of video (and therefore anonymise)