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jrdemasi/install_bioconda

Created November 26, 2018 21:36
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Brief instructions for installing bioconda on top of miniconda3
Raw
install_bioconda
cd $HOME
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash $HOME/Miniconda3-latest-Linux-x86_64.sh
(Follow the prompts to install miniconda3 in the default location)
. $HOME/miniconda3/bin/activate
(Your prompt should change to indicate you're in the base of a miniconda3 env)
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda install porechop
which porechop
(the last line should point to your porechop binary, confirming it's installed)
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