José R. Ferrer Paris jrfep
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jrfep
/ Coral-reef-N-Tanzania-Kenya-criterion-D1-results.dot
Created
July 27, 2023 05:35
Graphviz diagram describing the sequential rule for adjusting category of risk from multiple indicators. Example from Obura et al. (2022). https://doi.org/10.1038/s41893-021-00817-0 Table S16
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| digraph G { | |
| graph [ | |
| label = "Coral Reef Northern Tanzania/Kenya - Subcriterion D1" | |
| labelloc = t | |
| compound=true; | |
| fontname = "Helvetica,Arial,sans-serif" | |
| fontsize = 20 | |
| layout = dot | |
| rankdir = TD | |
| newrank = true |
jrfep
/ auto-organise-files.sh
Created
July 10, 2023 09:24
Auto organise files in subfolder for each date
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| #!/bin/bash | |
| ## basically following https://stackoverflow.com/questions/27475057/sort-files-into-sub-folders-by-date-bash | |
| DIR=`pwd` | |
| target=$DIR | |
| cd "$DIR" | |
| for file in *; do | |
| subfolderName=$(stat -f "%Sm" -t "%Y-%m-%d" $file) |
jrfep
/ gradual-grid.gv
Created
April 20, 2023 22:55
Visual representation of a gradual grid using graphviz dot language
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| digraph G { | |
| bgcolor=transparent; | |
| start [shape=Mdiamond | |
| label=<<TABLE COLOR='white' CELLPADDING="0" CELLSPACING="0" BORDER="1"> | |
| <TR> | |
| <TD BGCOLOR='#ffffd9'>1</TD> | |
| <TD BGCOLOR='white'>X</TD> | |
| <TD BGCOLOR='white'>X</TD> | |
| <TD BGCOLOR='white'>X</TD> |
jrfep
/ explore-gpx-file-with-mapview.R
Created
July 5, 2022 22:03
Visualise a GPS track in .gpx format with mapview in R
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| require(mapview) | |
| require(sf) | |
| # depending on the version of GDAL, you might need to use `fgb = TRUE` instead | |
| mapviewOptions(fgb = FALSE) | |
| gpx_file <- "~/Desktop/Track_02-JUL-22 170634.gpx" # path and filename | |
| read_sf(gpx_file,'tracks') -> paseo | |
| paseo %>% st_geometry() %>% plot() # check if there is data on the track | |
| mapview(paseo) |
jrfep
/ cummulative-R-packages-plot.R
Last active
November 19, 2021 20:05
Cummulative number of R packages on CRAN
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| #!R --vanilla | |
| ## original idea & report by Henrik Bengtsson at | |
| ## https://stat.ethz.ch/pipermail/r-devel/2016-February/072388.html | |
| ## some code borrowed from: | |
| ## https://gist.github.com/daroczig/3cf06d6db4be2bbe3368 | |
| library(rvest) | |
| library(dplyr) | |
| require(stringr) |
jrfep
/ CropGeotiffExample.sh
Created
July 28, 2016 14:23
Crop and rename raster data in geotiff format with gdal in a linux bash
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| ## files downloaded from http://chelsa-climate.org/downloads/ | |
| ## monthly temperatures and precipitation with global extent | |
| ## output options: | |
| outputdir = "$HOME/output" | |
| xmin=-74 | |
| ymin=0 | |
| xmax=-58 | |
| ymax=13 | |
| for (( j=1; j <= 12; j++ )) | |
| do |