01.cmake

Wed Jun 10 19:52:40 +0000 2015

cmake
..
-DCMAKE_C_FLAGS_RELEASE=
-DCMAKE_CXX_FLAGS_RELEASE=
-DCMAKE_INSTALL_PREFIX=/home/ubuntu/.linuxbrew/Cellar/spades/3.5.0
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_FIND_FRAMEWORK=LAST
-DCMAKE_VERBOSE_MAKEFILE=ON
-Wno-dev
-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=1

-- The C compiler identification is GNU 4.6.3
-- The CXX compiler identification is GNU 4.6.3
-- Check for working C compiler: /usr/bin/gcc-4.6
-- Check for working C compiler: /usr/bin/gcc-4.6 -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/g++-4.6
-- Check for working CXX compiler: /usr/bin/g++-4.6 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at cmake/deps.cmake:6 (message):
  SPAdes requires gcc version 4.7 or later
Call Stack (most recent call first):
  CMakeLists.txt:45 (include)


-- Configuring incomplete, errors occurred!
See also "/tmp/spades20150610-22049-2mofmo/SPAdes-3.5.0/src/build/CMakeFiles/CMakeOutput.log".

HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/linuxbrew.git
HEAD: d0844607d93192f6012cf19676c157cbfc31954d
Last commit: 3 hours ago
HOMEBREW_PREFIX: /home/ubuntu/.linuxbrew
HOMEBREW_CELLAR: /home/ubuntu/.linuxbrew/Cellar
CPU: single-core 64-bit 6
OS X: 0-x86_64
Xcode: N/A
CLT: N/A
Clang: N/A
X11: N/A
System Ruby: 1.8.7-p352 => /usr/bin/ruby1.8
Perl: /usr/bin/perl
Python: /usr/bin/python => /usr/bin/python2.7
Ruby: /usr/bin/ruby => /usr/bin/ruby1.8
Java: 1.6.0_35

CC: /usr/bin/gcc-4.6
CXX: /usr/bin/g++-4.6
OBJC: /usr/bin/gcc-4.6
OBJCXX: /usr/bin/g++-4.6
CFLAGS: -Os -w -pipe -march=core2
CXXFLAGS: -Os -w -pipe -march=core2
CPPFLAGS: -isystem/home/ubuntu/.linuxbrew/include
LDFLAGS: -L/home/ubuntu/.linuxbrew/lib -Wl,-rpath,/home/ubuntu/.linuxbrew/lib
MAKEFLAGS: -j1
CMAKE_PREFIX_PATH: /home/ubuntu/.linuxbrew
PKG_CONFIG_LIBDIR: /home/ubuntu/.linuxbrew/lib/pkgconfig:/usr/lib/pkgconfig
PATH: /usr/local/bin/SPAdes/bin:/home/ubuntu/.linuxbrew/bin:/opt/spades:/home/ubuntu/.linuxbrew/bin:/qiime_software/sourcetracker-0.9.8-release/.:/qiime_software/qiime-galaxy-0.0.1-repository-c7be1892/scripts:/qiime_software/cdhit-3.1-release/.:/qiime_software/rdpclassifier-2.2-release/.:/qiime_software/muscle-3.8.31-release/.:/qiime_software/mothur-1.25.0-release/.:/qiime_software/SeqPrep-v1.1-release/.:/qiime_software/blast-2.2.22-release/bin:/qiime_software/bwa-0.6.2-release/.:/qiime_software/drisee-1.2-release/.:/qiime_software/tax2tree-1.0-release/bin:/qiime_software/ea-utils-1.1.2-537-release/.:/qiime_software/vienna-1.8.4-release/.:/qiime_software/infernal-1.0.2-release/bin:/qiime_software/cdbtools-10.11.2010-release/.:/qiime_software/chimeraslayer-4.29.2010-release/ChimeraSlayer:/qiime_software/chimeraslayer-4.29.2010-release/NAST-iEr:/qiime_software/cytoscape-2.7.0-release/.:/qiime_software/rtax-0.984-release/.:/qiime_software/blat-34-release/.:/qiime_software/pprospector-1.0.1-release/bin:/qiime_software/ampliconnoise-1.27-release/Scripts:/qiime_software/ampliconnoise-1.27-release/bin:/qiime_software/raxml-7.3.0-release/.:/qiime_software/clearcut-1.0.9-release/.:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/ubuntu/.linuxbrew/Library/ENV/scm

config.out

HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/linuxbrew.git
HEAD: d0844607d93192f6012cf19676c157cbfc31954d
Last commit: 5 hours ago
HOMEBREW_PREFIX: /home/ubuntu/.linuxbrew
HOMEBREW_CELLAR: /home/ubuntu/.linuxbrew/Cellar
CPU: single-core 64-bit 6
OS X: 0-x86_64
Xcode: N/A
CLT: N/A
Clang: N/A
X11: N/A
System Ruby: 1.8.7-p352 => /usr/bin/ruby1.8
Perl: /usr/bin/perl
Python: /usr/bin/python => /usr/bin/python2.7
Ruby: /usr/bin/ruby => /usr/bin/ruby1.8
Java: 1.6.0_35

doctor.out

Warning: Broken symlinks were found. Remove them with `brew prune`:
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Please note that these warnings are just used to help the Homebrew maintainers
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Please upgrade: brew upgrade git

tap.out

Formula: spades
Tap: homebrew/homebrew-science
Path: /home/ubuntu/.linuxbrew/Library/Taps/homebrew/homebrew-science/spades.rb